grant

User-friendly open-source pipeline for anatomically precise analysis of single-trial M/EEG

Organization MCMASTER UNIVERSITYLocation HAMILTON, CANADAPosted 20 Sept 2024Deadline 30 Jun 2027
NIHUS FederalResearch GrantFY2025AcousticsAdoptionAlgorithmsAnatomic SitesAnatomic structuresAnatomyAuditory CortexAuditory areaBRAIN initiativeBayesian ModelingBayesian adaptive designsBayesian adaptive modelsBayesian belief networkBayesian belief updating modelBayesian frameworkBayesian hierarchical modelBayesian network modelBayesian nonparametric modelsBayesian spatial data modelBayesian spatial image modelsBayesian spatial modelsBayesian statistical modelsBayesian tracking algorithmsBenchmarkingBest Practice AnalysisBrainBrain Nervous SystemBrain Research through Advancing Innovative Neurotechnologies initiativeCell Communication and SignalingCell SignalingCodeCoding SystemCommunitiesComputer Software ToolsComputer softwareDataData AnalysesData AnalysisData BasesData SetData SourcesDatabasesDevelopmentDocumentationEEGEducational workshopElectroencephalogramElectroencephalographyEncephalonEpilepsyEpileptic SeizuresEpilepticsEventExperimental DesignsExperimental ModelsFormulationFunctional MRIFunctional Magnetic Resonance ImagingFutureHeadHumanInfrastructureIntracellular Communication and SignalingIntuitionInvestigatorsKnowledgeLanguageLocationMR ImagingMR TomographyMRIMRIsMagnetic Resonance ImagingMapsMeasurementMeasuresMedical Imaging, Magnetic Resonance / Nuclear Magnetic ResonanceMethodsModelingModern ManMotionMovementMsecMultivariate AnalysesMultivariate AnalysisMusicNMR ImagingNMR TomographyNatureNoiseNuclear Magnetic Resonance ImagingParticipantPerformanceProcessPsychologistPythonsResearchResearch PersonnelResearchersResolutionScientistSeizure DisorderSensory ProcessSeriesSightSignal TransductionSignal Transduction SystemsSignalingSoftwareSoftware ToolsSourceSpecific qualifier valueSpecifiedSpeechStimulusSystemTechniquesTestingTimeVariantVariationVisionVisualVisual CortexVisual MotionVisualizationWorkWorkshopZeugmatographyanalysis pipelinebasebasesbenchmarkbiological signal transductionbody movementclinical applicabilityclinical applicationcognitive processcomputer scientistconnectomecostdata basedata explorationdata interpretationdepositorydesigndesigningdevelopmentaleducation resourceseducational resourcesepilepsiaepileptogenicexperimentexperimental researchexperimental studyexperimentsfMRIflexibilityflexiblehemodynamicsimprovedinnovateinnovationinnovativeintuitivemachine learning based methodmachine learning methodmachine learning methodologiesmental statemental statusmillisecondmovieneuralneurophysiologicalneurophysiologynovelopen dataopen scienceopen sourceopen-source datapodcastrepositoryresolutionsresponsesensorskillssoftware toolkitsource localizationstatisticstemporal measurementtemporal resolutiontime measurementtooluser-friendlyvisual corticalvisual functionweb sitewebsite
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Full Description

PROJECT SUMMARY
Magneto- and electroencephalography (M/EEG) measure human brain activity non-invasively, using sensors

placed on or above the head, with millisecond accuracy, and have long been used to study neural and cognitive

processes. This project is to develop a user-friendly, open-source analysis pipeline to make recent innovations

in analysis techniques available to a broad audience. First, M/EEG has traditionally been analyzed primarily as

event-related activity (an experiment is conceptualized as a series of trials, each constituting a unique event; for

example, the response to a syllable da). Such experiments typically require many repetitions of identical trials to

separate signal from noise in the M/EEG response. More recent techniques allow conceptualizing experimental

time as continuous, with different aspects of stimuli that are distributed in time evoking different overlapping brain

responses (for example, the auditory cortex response continuously “tracks” the acoustic envelope of speech, or

the visual cortex tracks the amount of visual motion in a movie, etc.). In this time-continuous analysis, no

repeated trials are necessary, and the signal is instead estimated using detailed models of the stimuli. Second,

while brain activity is measured outside of the head, it has long been possible to estimate anatomically localized

sources of this activity in the brain, and recent advances have greatly improved this source estimation. These

two advances (single-trial continuous analysis and improved source localization) have only recently been

combined successfully, and no off-the-shelf software package allows researchers to readily apply this method to

existing or new datasets. This project will develop such a software tool with an easy-to-use pipeline for group

level analysis. The technique that this tool will make available is essential for analyzing data from experimental

designs with naturalistic stimuli (for example, participants watching a movie or listening to an audiobook). Such

experiments offer enhanced validity, and are rich and versatile: researchers can test many different hypotheses

about what neural processes are evoked by the stimuli. However, the traditional averaging techniques that are

widely available are not remotely suitable. The software tool developed here is ideally suited for analyzing such

datasets. It will be made widely accessible and user-friendly, to lower the threshold for non-neuroscientists to

test hypotheses about neural representations. For example, existing datasets of audiobook listening could be

used by psychologists, computer scientists and linguists to test hypotheses about neural representations of

speech.

Grant Number: 5R01MH132660-02
NIH Institute/Center: NIH

Principal Investigator: Christian Brodbeck

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