grant

Unraveling Metastasis Drivers in Small Cell Lung Cancer via Human Pluripotent Stem Cell-Based Approach

Organization UNIVERSITY OF CHICAGOLocation CHICAGO, UNITED STATESPosted 1 Mar 2025Deadline 28 Feb 2027
NIHUS FederalResearch GrantFY2025ATAC sequencingATAC-seqATACseqAbscissionAggressionAggressive behaviorAnimal ModelAnimal Models and Related StudiesAntioncogene Protein p53AreaAssayAssay for Transposase-Accessible Chromatin using sequencingAutomobile DrivingBioassayBiologicalBiological AssayBody TissuesCancer ModelCancer PatientCancer cell lineCancerModelCancersCardiovascularCardiovascular Body SystemCardiovascular Organ SystemCardiovascular systemCell BodyCellsCellular Tumor Antigen P53ChIP SequencingChIP-seqChIPseqChromatinChromosomal OrganizationChromosomal StructureChromosome OrganizationChromosome StructuresClinicalComplexDevelopmentDiagnosisDiseaseDisorderEnzyme GeneEnzymesEpithelial CellsEventExcisionExpression SignatureExtirpationFamilyGastric Body CancerGastric CancerGastric Cardia CancerGastric Fundus CancerGastric Pylorus CancerGene ExpressionGene Expression ProfileGenerationsGenesGenetic EngineeringGenetic Engineering BiotechnologyGenetic Engineering Molecular BiologyGenomicsHeart VascularHumanIn VitroInduced DNA AlterationInduced MutationInduced Sequence AlterationInvadedLinkMalignant CellMalignant Gastric NeoplasmMalignant Gastric TumorMalignant NeoplasmsMalignant TumorMalignant neoplasm of prostateMalignant prostatic tumorMapsMetastasisMetastasizeMetastatic LesionMetastatic MassMetastatic NeoplasmMetastatic TumorMetastatic toMethodsMiceMice MammalsModelingModern ManModificationMolecularMorbidityMorbidity - disease rateMurineMusMutateNeoplasm MetastasisNeuroendocrine CellNon-Polyadenylated RNAOat cell carcinomaOncogenicOncoprotein p53Operative ProceduresOperative Surgical ProceduresOrganOutcomes ResearchP53PDX modelPatient derived xenograftPatient outcomePatient-Centered OutcomesPatient-Focused OutcomesPatientsPatternPenetrationPhosphoprotein P53Phosphoprotein pp53PopulationPrimary NeoplasmPrimary TumorProcessPrognosisProstate CAProstate CancerProstate malignancyProtein TP53PublishingRB1RB1 geneRNARNA Gene ProductsRecombinant DNA TechnologyRemovalResearchRespiratory EpitheliumRibonucleic AcidRoleSamplingSecondary NeoplasmSecondary TumorSeriesSiteSmall Cell Lung CancerSolid NeoplasmSolid TumorSortingStomach CancerStructure of respiratory epitheliumSurfaceSurgicalSurgical InterventionsSurgical ProcedureSurgical RemovalSystemTP53TP53 geneTRP53TechniquesTechnologyTestingTissuesTransposaseTumor Protein p53Tumor Protein p53 GeneTumor TissueWorkairway epitheliumanti-cancer researchassay for transposase accessible chromatin followed by sequencingassay for transposase accessible chromatin seqassay for transposase accessible chromatin sequencingassay for transposase-accessible chromatin with sequencingbiologiccancer cellcancer initiationcancer metastasiscancer progressioncancer researchcancer typecatalystcell behaviorcellular behaviorchromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingchromatin modificationchromatin remodelingcirculatory systemdevelopmentaldirected differentiationdrivingexperimentexperimental researchexperimental studyexperimentsgastric malignancygene expression patterngene expression signaturegenetically engineeredglobal gene expressionglobal transcription profilehuman derived pluripotent stem cellhuman pluripotent stem cellimprovedin vivoinnovateinnovationinnovativeinsightlung cancer celllung oat cell carcinomalung small cell neuroendocrine carcinomamalignancymalignant stomach neoplasmmalignant stomach tumormetastatic processmodel of animalmortalityneoplasm progressionneoplasm/cancerneoplastic progressionnew approachesnew diagnosticsnew technologynew therapeutic approachnew therapeutic interventionnew therapeutic strategiesnew therapy approachesnew treatment approachnew treatment strategynext generation diagnosticsnovel approachesnovel diagnosticsnovel strategiesnovel strategynovel technologiesnovel therapeutic approachnovel therapeutic interventionnovel therapeutic strategiesnovel therapy approachoat cell canceroverexpressoverexpressionp53 Antigenp53 Genesp53 Tumor Suppressorpatient derived xenograft modelpatient oriented outcomespre-clinicalpreclinicalprogenitor cell modelprogenitor modelprogramsprotein p53pulmonaryresectionrespiratory tract epitheliumretinoblastoma-1scATAC sequencingscATAC-seqscRNA sequencingscRNA-seqsingle cell ATAC-seqsingle cell ATAC-sequencingsingle cell Assay for Transposase Accessible Chromatin sequencingsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell sequencing assay for transposase accessible chromatinsingle cell transcriptomic profilingsingle-cell Assay for Transposase-Accessible Chromatin with sequencingsingle-cell RNA sequencingsingle-cell assay for transposase-accessible chromatin using sequencingsingle-cell assay for transposase-accessible chromatin-seqsmall cell lung carcinomasmall cell undifferentiated carcinomasocial rolespecies differencestem and progenitor cell modelstem cell approachstem cell based approachstem cell based modelstem cell derived modelstem cell methodstem cell methodologystem cell modelstem cell procedurestem cell techniquestomach fundus cancerstomach pylorus cancersurgerytherapeutically effectivetooltraittranscriptional profiletranscriptional signaturetranscriptometumortumor cell metastasistumor initiationtumor progression
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Full Description

SUMMARY
Small cell lung cancer (SCLC) is among the most lethal malignancies, noted for its pronounced metastatic

potential across solid tumors, yet the underlying mechanisms of its metastasis remain largely unknown. In this

project, we aim to deploy innovative methods and tools to delve into the longstanding enigmas of SCLC

metastasis, leveraging advances in technology to gain clearer insights into this complex issue.

We recently developed a method to generate functionally viable pulmonary neuroendocrine cells (PNECs) from

human pluripotent stem cells (hPSCs). These cells, as the putative cell of origin of SCLC, can be transformed

oncogenically by inducing mutations in key SCLC genes—RB1, TP53, and MYC—resulting in tumor formation

in mice that closely resembles clinical SCLC. These modified PNECs effectively replicate the critical stages of

SCLC, from tumor initiation to metastatic spread, providing a robust model to investigate the cellular and

molecular drivers behind the disease’s aggressive metastasis.

Our research strategy integrates hPSC-derived SCLC models, clinical samples, patient-derived xenografts

(PDX), and state-of-the-art technologies such as single-cell sequencing and ATAC-seq. By examining cell

behavior in both primary tumors and metastatic sites, we propose to uncover essential insights into the metastatic

cellular and molecular drivers of SCLC. The outcomes of this research are anticipated to shed light on why SCLC

aggressively metastasizes and could lead to novel diagnostic and therapeutic approaches for this formidable

cancer.

Grant Number: 1R21CA299377-01
NIH Institute/Center: NIH

Principal Investigator: Joyce Chen

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