grant

Transcriptional control of stress-induced resistance to retinal degeneration

Organization UNIVERSITY OF PITTSBURGH AT PITTSBURGHLocation PITTSBURGH, UNITED STATESPosted 1 Sept 2021Deadline 31 Aug 2026
NIHUS FederalResearch GrantFY2025AffectAge related macular degenerationAge-Related MaculopathyBasal Transcription FactorBasal transcription factor genesBasic Fibroblast Growth FactorBasic Fibroblast Growth Factor GeneBindingBlindnessBody TissuesCell BodyCell Communication and SignalingCell DeathCell ProtectionCell SignalingCellsCessation of lifeChIP SequencingChIP-seqChIPseqCholinergic Differentiation FactorCytoprotectionD-FactorDNA mutationDataData SetDeathDiseaseDisease ClusteringsDisorderFGF-2FGF2FGF2 geneFGFBFibroblast Growth Factor 2Fibroblast Growth Factor 2 GeneGene ExpressionGene TranscriptionGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGenetic ChangeGenetic TranscriptionGenetic defectGenetic mutationGliosisHBGF-2Heparin-Binding Growth Factor 2Heparin-Binding Growth Factor Class IIHortega cellImmunoglobulin Enhancer-Binding ProteinIndividualInflammationInflammatoryInjectionsInjuryIntracellular Communication and SignalingKO miceKnock-out MiceKnockout MiceKnowledgeLIFLIF geneLIFRLIFR geneLeadLightLight Signal TransductionMediatingMethodsMiceMice MammalsMicrogliaModelingMolecular InteractionMuller gliaMuller's cellMurineMusMutationMüller cellMüller gliaNF-kBNF-kappa BNF-kappaBNFKBNuclear Factor kappa BNuclear Transcription Factor NF-kBNull MousePathologicPb elementPersonsPhotoradiationPhotoreceptor CellPhotoreceptorsPhotosensitive CellPhototransductionPlayProstate Epithelial Cell Growth FactorPublicationsPublishingQOLQuality of lifeRNA ExpressionReceptor ProteinRegulationResearchResistanceRetinaRetinal DegenerationRodRod PhotoreceptorsRoleScientific PublicationSignal TransductionSignal Transduction SystemsSignalingSiteSortingStressTechniquesTestingTissuesTranscriptionTranscription ActivationTranscription ActivatorTranscription CoactivatorTranscription Factor CoactivatorTranscription Factor NF-kBTranscription Factor Proto-OncogeneTranscription factor genesTranscriptional ActivationTranscriptional Activator/CoactivatorTranscriptional ControlTranscriptional RegulationTransducersUnited StatesVisual ReceptorVisual TransductionWorkage dependent macular degenerationage induced macular degenerationage related macular diseaseage related macular dystrophyantagonismantagonistbFGFbiological adaptation to stressbiological signal transductioncell typechromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcytokinecytoprotectivedata integrationdegenerative retina diseasesdesigndesigningdifferential expressiondifferentially expressedgenome mutationgitter cellheavy metal Pbheavy metal leadinherited retinal degenerationinjuredinjurieskappa B Enhancer Binding Proteinleukemia inhibitor factorleukemia inhibitory factormesogliamicroglial cellmicrogliocytemigrationnecrocytosisnew drug treatmentsnew drugsnew pharmacological therapeuticnew therapeuticsnew therapynext generation therapeuticsnovel drug treatmentsnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel therapeuticsnovel therapynuclear factor kappa betaperivascular glial cellpromoterpromotorreaction; crisisreceptorresistantresponseretina degenerationretinal degenerativeretinal degenerative diseasesretinal neuronretinal rodsrod cellscRNA sequencingscRNA-seqsenile macular diseasesingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial rolestress responsestress statestress; reactiontranscription factortranscriptional differencesvision lossvisual lossvisual phototransduction
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Full Description

Abstract:
Retinal degenerations are a large cluster of diseases characterized by the irreversible loss of

photoreceptors. The death of these cells results in a permanent loss of vision that can have debilitating

impacts on an individual's quality of life. Despite the diversity among triggers for retinal degenerations, the

mechanisms surrounding photoreceptor death are often similar, suggesting the possibility of developing

gene/mutation-independent approaches to reduce blindness from multiple forms of retinal degeneration. We

and others have shown that STAT3 is activated in all retinal cells, including photoreceptors and Müller cells

during inherited retinal degeneration. Additional work has shown that activation of STAT3 plays an essential

role in promoting a wide array of gene expression changes to increase the cell’s capacity to resist cell death.

However, despite these impressive findings, little progress has been made in identifying the mechanisms by

which STAT3 regulates protection. In this project, we will use state of the art techniques including single-cell

RNA-seq and integrating the data with cell-specific ChIP-seq to comprehensively identify all genes and

transcriptional networks regulated by STAT3 in retinal Müller cells and rods.

Grant Number: 5R01EY032051-05
NIH Institute/Center: NIH

Principal Investigator: John Ash

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