grant

The role of the transcriptional repressor ZEB2 in human neural crest cell formation and craniofacial pathology

Organization STATE UNIVERSITY OF NEW YORK AT BUFFALOLocation AMHERST, UNITED STATESPosted 1 Sept 2024Deadline 31 Aug 2027
NIHUS FederalResearch GrantFY2025ATAC sequencingATAC-seqATACseqAddressAssay for Transposase-Accessible Chromatin using sequencingBasal Transcription FactorBasal transcription factor genesBindingBirth DefectsBody TissuesCRISPRCRISPR/Cas systemCartilageCartilaginous TissueCell Communication and SignalingCell SignalingCell modelCellular modelCephalicChromatinClustered Regularly Interspaced Short Palindromic RepeatsCo-cultureCocultivationCocultureCoculture TechniquesComplexCongenital AbnormalityCongenital Anatomical AbnormalityCongenital DefectsCongenital DeformityCongenital MalformationCouplingCranialCraniofacial AbnormalitiesDNA mutationDefectDentalDevelopmentDiagnosticDiseaseDisorderEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessEpithelial CellsFaceFailureGene ExpressionGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGenetic ChangeGenetic defectGenetic mutationGenotypeHeterozygoteHumanHuman PathologyIndividualIntellectual disabilityIntellectual functioning disabilityIntellectual limitationIntracellular Communication and SignalingInvestigationMediatingMethodsMissionModelingModern ManMolecularMolecular InteractionMothers Against Decapentaplegic HomologMowat-Wilson syndromeMutationNIDCRNIDRNational Institute of Dental ResearchNational Institute of Dental and Craniofacial ResearchNervous SystemNeural CrestNeural Crest CellNeurologic Body SystemNeurologic Organ SystemNuRDNuRD complexOdontogenesisOrganOrganoidsOsteoblastsPathologyPathway interactionsPatientsPhasePhenotypePilot ProjectsPluripotent Stem CellsPopulationProcessProtein TruncationProtocolProtocols documentationRNA SeqRNA sequencingRNAseqReceptor ProteinRegulationRepressionRoleSeveritiesSignal TransductionSignal Transduction SystemsSignalingSkeletonSma- and Mad-Related ProteinsSmad ProteinsTestingTherapeuticTimeTissuesToothTooth AbnormalitiesTooth structureTranscription Factor Proto-OncogeneTranscription RepressorTranscription factor genesTranscriptional RepressorVertebrate AnimalsVertebratesWorkassay for transposase accessible chromatin followed by sequencingassay for transposase accessible chromatin seqassay for transposase accessible chromatin sequencingassay for transposase-accessible chromatin with sequencingbiological signal transductioncareerco-repressorcongenital dentition disordercorepressorcraniofacialcraniofacial anomaliescraniofacial bonecraniofacial defectscraniofacial developmentcraniofacial malformationcraniofaciesde novo mutationde novo variantdental developmentdevelopmentalembryo cellepigeneticallyepithelial to mesenchymal transitionexperimentexperimental researchexperimental studyexperimentsfacesfacialgene co-repressorgene corepressorgene regulatory networkgenetic co-repressorgenetic corepressorgenetic repressorgenome mutationgenome scalegenome-widegenomewidehESCheterozygosityhuman ES cellhuman ESChuman embryonic stem cellhuman modeliPSiPSCiPSCsimprovedinduced pluripotent cellinduced pluripotent stem cellinducible pluripotent cellinducible pluripotent stem cellinsightintellectual and developmental disabilitylimited intellectual functioningmigrationmodel of humanmultipotencymultipotentmultipotent cellmutantneural platenoveloral cavity epitheliumoral epitheliaoral epitheliumosteoblast cell differentiationosteoblast differentiationosteoblastic differentiationpathwaypilot studypluripotent progenitorrare conditionrare syndromereceptorrecruitskeletonssocial roleteethtooltranscription factortranscriptome sequencingtranscriptomic sequencingtranscriptomicsvertebrata
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Full Description

Project Summary
The objective of this proposal is to delineate the role of the transcriptional repressor ZEB2 during human neural

crest cell formation, craniofacial differentiation, and Mowat-Wilson Syndrome. The neural crest is a multipotent

embryonic cell population unique to vertebrates which migrates extensively and differentiates into a variety of

derivatives, including most of the craniofacial bone, cartilage, and dental organ tissues. Numerous human

pathologies are associated with abnormal neural crest cell development, including the recently delineated

neurocristopathy Mowat-Wilson Syndrome (MWS). MWS is a rare syndrome caused by de novo heterozygous

mutations in ZEB2 leading to a distinct facial phenotype, dental abnormalities, intellectual disability, and other

anomalies including Hirschprung disease which are indicative of neural crest cell defects at multiple axial levels.

However, significant genotypic and phenotypic variability has been observed among MWS patients, and the

underlying mechanisms that contribute to this disease are not well understood. Furthermore, while ZEB2 has

been implicated as a major developmental regulator of the nervous system as well as in neural crest cell

epithelial-to-mesenchymal transition and migration, recent evidence in our human neural crest cell model

indicates a crucial role for ZEB2 in the early formation of the neural plate border and neural crest. ZEB2 is known

to negatively regulate TGFb superfamily signaling, whose modulation is essential for proper neural crest

formation and differentiation. Therefore, it is hypothesized that ZEB2 functions reiteratively to establish the

repressive epigenetic landscape throughout neural crest cell formation and craniofacial development by

modulating proper TGFb superfamily signaling, and that the failure of this regulation underscores the MWS

pathology. To test this hypothesis, three specific aims are proposed. Aim 1 will examine the modular functionality

of ZEB2 in regulating the proper levels of TGFb signaling throughout wild-type human cranial neural crest cell

formation. In particular, the cis-regulatory interactions between ZEB2 and TGFb receptor activated Smad

proteins and the functional requirement of co-repressors leading to changes in chromatin accessibility will be

delineated. In Aim 2, the MWS pathology will be addressed through the establishment of induced pluripotent

stem cells from MWS patients of diverse genotypes. Using these tools, the precise transcriptomic and epigenetic

misregulation during MWS-based neural crest cell formation will be interrogated, providing much needed

molecular insight into this understudied pathology. In Aim 3 of this proposal, the role of ZEB2 in wild-type and

MWS human tooth formation will be interrogated through the establishment of a human neural crest cell-based

tooth organoid model. These results will reveal for the first time the molecular role of this transcriptional repressor

throughout multiple stages of human neural crest cell formation, differentiation, and pathology.

Grant Number: 5R00DE029878-05
NIH Institute/Center: NIH

Principal Investigator: Rebekah Charney

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