grant

The role of retinoic acid signaling in patterning the human cerebral cortex

Organization UNIVERSITY OF CALIFORNIA, SAN FRANCISCOLocation SAN FRANCISCO, UNITED STATESPosted 1 Apr 2022Deadline 31 Mar 2027
NIHUS FederalResearch GrantFY2026ASDATRAAdvisory CommitteesAnatomic SitesAnatomic structuresAnatomyAnimal ModelAnimal Models and Related StudiesAnimalsAnteriorAreaAssayAutismAutistic DisorderAutomobile DrivingAxonBasal Transcription FactorBasal transcription factor genesBindingBioassayBiological AssayBody TissuesBrainBrain Nervous SystemCaliforniaCell BodyCell Communication and SignalingCell LineageCell SignalingCellsCerebral cortexCerebrumClinicalCommittee MembersCommunicationDNA BindingDNA Binding InteractionDNA Synthesis FactorDNA boundDataDecision MakingDevelopmentDevelopment PlansDoctor of PhilosophyEarly Infantile AutismEncephalonEndothelial Cell Growth FactorEnhancersEnvironmentEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessEvolutionExperimental ModelsExposure toExpression SignatureFGFFGF8FGF8 geneFamilyFellowshipFibroblast Growth FactorFibroblast Growth Factor Gene FamilyFibroblast Growth Regulatory FactorFore-BrainForebrainFoundationsFunctional RNAFutureGene Action RegulationGene ExpressionGene Expression ProfileGene Expression RegulationGene RegulationGene Regulation ProcessGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGenetic MarkersGenetic PredispositionGenetic Predisposition to DiseaseGenetic SusceptibilityGenetic propensityGeniculate BodiesGeniculate body structureGliaGlial CellsGoalsGrantHAP geneHAP proteinHBGF-8HBV-Activated ProteinHepatitis B Virus Activated ProteinHeterograftHeterologous TransplantationHumanImmediate MemoryImmunohistochemistryImmunohistochemistry Cell/TissueImmunohistochemistry Staining MethodIn VitroInfantile AutismInherited PredispositionInherited SusceptibilityIntracellular Communication and SignalingKanner's SyndromeKnowledgeKolliker's reticulumLaboratoriesLateralLearningLocationMediatingMedicineMentorsMentorshipMetathalamusMiceMice MammalsModelingModern ManMolecularMolecular InteractionMotorMurineMusNR1B3Nerve CellsNerve UnitNervous System DiseasesNervous System DisorderNeural CellNeural Stem CellNeurocyteNeurodevelopmental DisorderNeurogliaNeuroglial CellsNeurologic DisordersNeurological Development DisorderNeurological DisordersNeuronsNeurosciencesNon-neuronal cellNoncoding RNANonneuronal cellNontranslated RNANuclearNuclear ReceptorsOrganoidsPathologic ProcessesPathological ProcessesPathologyPatientsPatternPh.D.PhDPhenotypePhysiciansPlayPrefrontal CortexPreventivePrimary visual cortexPrimatesPrimates MammalsProcessProsencephalonPublishingRAR beta 2RAR, Beta FormRAR-EpsilonRARBRARB geneRARCRARGRARG geneRARbeta2RARβ2RadialRadiusRegulator GenesRegulatory ElementReporterResearchResolutionRetinoic AcidRetinoic Acid BindingRetinoic Acid ReceptorRetinoic Acid Receptor BetaRoleSan FranciscoSchizophreniaSchizophrenic DisordersShapesShort-Term MemorySignal PathwaySignal TransductionSignal Transduction SystemsSignalingSpecific qualifier valueSpecifiedStriate CortexStriate areaTask ForcesTechniquesTestingThalamic structureThalamusTherapeuticTissuesTrainingTrans Vitamin A AcidTranscription Factor Proto-OncogeneTranscription factor genesTranscriptional Regulatory ElementsTransplantationTretinoinTretinoinumUniversitiesUntranslated RNAVitamin AVitamin A AcidWorkWritingXenograftXenograft procedureXenotransplantationadvisory teamall-trans-Retinoic Acidall-trans-Vitamin A acidarea striataautism spectral disorderautism spectrum disorderautistic spectrum disorderbiological signal transductioncareercareer developmentcell typecerebralcognitive abilitycognitive processcollegecollegiatecomparativecortical progenitorscortical stem celldementia praecoxdevelopmentaldifferentiation factorsdrivingentire genomeepigeneticallyexcitatory neuronexperimentexperimental researchexperimental studyexperimentsfull genomegene biomarkergene expression biomarkergene expression patterngene expression signaturegene markergene signature biomarkergenetic biomarkergenetic trans acting elementgenetic vulnerabilitygenetically predisposedgeniculate nucleusgenome scalegenome sequencinggenome-widegenomewidegenomic datagenomic datasethiPSChuman iPShuman iPSChuman induced pluripotent cellhuman induced pluripotent stem cellshuman inducible pluripotent stem cellshuman inducible stem cellsinduced human pluripotent stem cellsinsightlarge scale datalarge scale data setslarge scale datasetsmembermodel of animalmolecular phenotypemorphogenic factorsmorphogensneonatal micenerve cementnerve stem cellneuralneural precursorneural precursor cellneural progenitorneural progenitor cellsneural stem and progenitor cellsneurodevelopmental diseaseneurogenic progenitorsneurogenic stem cellneurological diseaseneuron progenitorsneuronalneuronal progenitorneuronal progenitor cellsneuronal stem cellsneuropathologicneuropathologicalneuropathologyneuroprogenitorneuropsychiatric diseaseneuropsychiatric disordernoncodingorganoid transplantationpharmacologicpleasurepostmitoticprenatalprogenitorprogenitor and neural stem cellsprogramsprotein expressionreceptor bindingreceptor boundregulatory generesolutionsresponseretinoic acid receptor beta 2retinoic acid receptor β 2schizophrenicskillssocial rolethalamictrans acting elementtrans-Retinoic Acidtranscription factortranscriptional profiletranscriptional signaturetransplantunbornwhole genomeworking memoryxeno-transplantxeno-transplantation
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Full Description

ABSTRACT/PROJECT SUMMARY
This application presents a five-year mentored research and training plan that will prepare Dr. Cathryn

Cadwell to be a leader in the field of cortical development and circuit assembly. Dr. Cadwell completed her MD

and PhD in Neuroscience at Baylor College of Medicine, where she studied the role of cell type and cell

lineage in shaping cortical circuits in the lab of Dr. Andreas Tolias, and is now completing her clinical fellowship

in Neuropathology at the University of California, San Francisco. Dr. Cadwell’s long-term career goal is to

advance our understanding of the pathological processes underlying neurodevelopmental and neuropsychiatric

disorders. This project will facilitate foundational discoveries for her independent research program, as she

seeks to delineate the mechanisms and functional consequences of cortical areal specification.

Different areas of the human brain give rise to unique cognitive abilities. For example, expansion of the

lateral prefrontal cortex (PFC) in humans is thought to underlie higher-order cognitive processes such as

decision-making, planning and working memory. Recent data has implicated retinoic acid (RA), a derivative of

vitamin A, as a key player in the early development of the PFC in humans; however, the precise mechanism by

which RA specifies PFC identities is unknown. This proposal leverages a human induced pluripotent stem cell–

derived cerebral organoid model, which recapitulates many aspects of early human brain development, to test

the hypothesis that RA acts in a cell type–specific manner to specify PFC identities. Using this model, Dr.

Cadwell proposes to 1) identify the nuclear receptors and gene regulatory elements that mediate RA signaling

in human cortical progenitors and 2) determine whether PFC-like areal fate is stable after RA induction. This

work will generate fundamental knowledge about the role of RA in patterning the cerebral cortex, and may

provide insights into neurodevelopmental disorders associated abnormal cortical areal specification.

The proposed career development plan includes training in cerebral organoid models, epigenetic

techniques and analysis of large-scale data sets. Dr. Cadwell will learn all of the skills needed for an

independent research career, including supervising trainees and staff, grant writing, and scientific

communication. She has assembled a world-class mentorship team with complementary expertise in

organoids and human brain development (Primary mentor, Dr. Tomasz Nowakowski), molecular mechanisms

of cortical development and patterning (Co-mentor Dr. John Rubenstein and Advisory Committee Member Dr.

Sam Pleasure), gene regulation (Advisory Committee Member Dr. Nadav Ahituv), analysis of large-scale

genomic data (Dr. Katie Pollard), and neuropathology of neurodevelopmental disorders (Dr. Eric Huang). Dr.

Cadwell, her mentors, and the Department of Pathology at UCSF are fully committed to this proposal and to

her goal of becoming an independent physician-neuroscientist by the completion of this training period.

Grant Number: 5K08NS126573-05
NIH Institute/Center: NIH

Principal Investigator: Cathryn Cadwell

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