grant

The Role of Hematopoietic Loss of Y Chromosome on Aging Phenotypes

Organization SEATTLE CHILDREN'S HOSPITALLocation SEATTLE, UNITED STATESPosted 1 Jul 2024Deadline 30 Jun 2027
NIHUS FederalResearch GrantFY2025AblationAffectAgeAge related pathologiesAgingAmentiaAneuploidAneuploidyAreaBasal Transcription FactorBasal transcription factor genesBindingBiological AgingBlood CellsBlood leukocyteBody TissuesCRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCancersCardiomyopathiesCardiovascular DiseasesCas nuclease technologyCell AgingCell BodyCell Culture TechniquesCell FunctionCell PhysiologyCell ProcessCell SenescenceCellsCellular AgingCellular FunctionCellular PhysiologyCellular ProcessCellular SenescenceCellular biologyChromatinClonal expansion of hematopoietic cellsClonal expansion of hematopoietic stem cellsClonal hematopoietic expansionClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyCognitive DisturbanceCognitive ImpairmentCognitive declineCognitive function abnormalDNA mutationDataDeath RateDementiaDisturbance in cognitionDysfunctionElderly manEndothelial CellsEndotheliumEnvironmentEpidemiological dataEpidemiology dataEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessFibroblastsFibrosisFibrosis in the heartFibrosis in the myocardiumFibrosis within the heartFibrosis within the myocardiumFibrotic myocardiumFunctional disorderGene ExpressionGene TranscriptionGeneral PopulationGeneral PublicGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGenetic ChangeGenetic TranscriptionGenetic defectGenetic mutationHSC subsetsHSC transplantationHeart InjuriesHeart Muscle tissueHeart failureHematologic Body SystemHematologic Organ SystemHematopoieticHematopoietic Body SystemHematopoietic Stem Cell TransplantHematopoietic Stem Cell TransplantationHematopoietic Stem Cell subsetsHematopoietic SystemHematopoietic progenitor subsetsHumanImmuneImmunesImpaired cognitionIncidenceIncrease lifespanInflammatoryLeukocytesLeukocytes Reticuloendothelial SystemLife ExpectancyLigandsLineage TracingLinkLung Tissue FibrosisMacrophageMalignant NeoplasmsMalignant TumorMarrow leukocyteMediatingMesenchymalMethodsMiceMice MammalsModern ManModificationMolecular InteractionMosaicismMurineMusMutateMutationMyocardial DiseasesMyocardial DisorderMyocardial tissueMyocardiopathiesPatientsPeripheral Blood CellPersonsPhenotypePhysiopathologyPopulationPrevalenceProcessPulmonary FibrosisRNA ExpressionRNA SeqRNA sequencingRNAseqReplicative SenescenceResearchRoleSomatic MutationSubcellular ProcessTissuesTrainingTranscriptionTranscription Factor Proto-OncogeneTranscription factor genesTransgenic MiceWhite Blood CellsWhite CellY ChromosomeY chromosome linkedY-linkedaccelerated agingaccelerated biological ageaccelerated biological agingage accelerationage associatedage associated diseaseage associated disorderage associated impairmentage associated pathologiesage correlatedage dependentage dependent diseaseage dependent disorderage dependent impairmentage dependent pathologiesage induced pathologiesage linkedage relatedage related human diseaseage related pathwaysage specificage-related diseaseage-related disorderage-related impairmentagedaged miceaged mouseagesaging associatedaging associated mechanismaging associated pathologiesaging dependent pathologiesaging induced pathologiesaging mechanismaging pathologiesaging pathwayaging relatedaging related mechanismaging related pathologiesaging related pathwaysaorta constrictionbiological mechanism of agebiological pathways of agebiological process of ageblood stem cell transplantationboost longevitycardiac failurecardiac fibrosiscardiac injurycardiovascular disordercell biologycell culturecell culturescell lineage analysiscell lineage mappingcell lineage tracingcell lineage trackingcellular lineage mappingcellular lineage trackingchromosome Y lossclonal expansions in the bloodclonal hematopoiesisclones in hematopoietic cellscognitive dysfunctioncognitive losscomparing females and malescomparing women and mencoronary fibrosisdel(Y)elderly menelderly miceelongating the lifespanenhance longevityepidemiologic dataepigeneticallyextend life spanextend lifespanextend longevityfemales compared to malesfemales compared with malesfemales versus malesfemales vs. malesfibrosis in the lungfibrotic heartfoster longevitygenome mutationhealthspanhealthy life spanheart fibrosishematopoietic cell cloneshematopoietic cell transplantationhematopoietic cellular transplantationhematopoietic progenitor cell transplantationhematopoietic stem cell clonalityhemopoietichistone demethylasehistone modificationimprove lifespanimprove longevityinsightinterestkidney fibrosislife spanlifespanlifespan extensionlung fibrosismalignancymechanism regulating agingmechanisms involved in agingmenmortalitymortality ratemortality ratiomosaic diseasesmosaic disordersmosaic lossmouse modelmurine modelmutantmyocardial fibrosismyocardium diseasemyocardium disorderneoplasm/cancernovelold micepathophysiologypathway involved in agingpro-agingprogeronicprogramsprolong lifespanprolong longevitypromote agingpromote lifespanpromote longevityrecruitrenal fibrosisreplicative agingresponsescATAC sequencingscATAC-seqscRNA sequencingscRNA-seqsenescent cellsingle cell ATAC-seqsingle cell ATAC-sequencingsingle cell Assay for Transposase Accessible Chromatin sequencingsingle cell RNA-seqsingle cell RNAseqsingle cell analysissingle cell expression profilingsingle cell sequencing assay for transposase accessible chromatinsingle cell transcriptomic profilingsingle-cell Assay for Transposase-Accessible Chromatin with sequencingsingle-cell RNA sequencingsingle-cell assay for transposase-accessible chromatin using sequencingsingle-cell assay for transposase-accessible chromatin-seqskillssocial rolesomatic variantsupport longevitytherapeutic targettissue culturetranscription factortranscriptome sequencingtranscriptomic sequencingwhite blood cellwhite blood corpusclewomen compared to menwomen compared with menwomen versus menwomen vs. men
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Full Description

Project Summary
Mosaic loss of Y chromosome in the hematopoietic system (mLOY) is the most common post-zygotic mutation

in humans. This form of aneuploidy, in a subset of hematopoietic stem cells, increases with age and affects

~45% of men by age 70. Epidemiological data have associated this condition with mortality, cancer, dementia,

and other age-associated conditions. Recently, our group has produced the first causal, mechanistic, and

epidemiological data linking mLOY to age-associated heart failure and other conditions associated with an

exuberant fibrotic response. A mouse model of mLOY showed diminished lifespan and increased progression of

age-associated pathologies, including cardiomyopathy, lung and renal fibrosis, and cognitive decline. The mLOY

recipient mice also showed increased progression of cardiac fibrosis and increased number of fibroblasts in the

myocardial tissue after cardiac injury. Further analysis using single cell RNA sequencing revealed that the mLOY

macrophages showed both an increased propensity towards pro-fibrotic macrophage polarization and increased

expression of pro-fibrotic ligands. These novel findings suggest that age-related mLOY in blood cells may be a

strong driver of tissue aging and fibrosis. However, the mechanistic connections between Y chromosome loss,

immune cell dysfunction, systemic fibrosis, and aging are not yet known.

Preliminary data suggests that mLOY macrophages may contribute to aging through multiple

mechanisms. Single cell RNA sequencing showed a reduced propensity of mLOY macrophages towards a pro-

inflammatory polarization, reduced expression of Il1b and Tnf, and reduced recruitment of leukocytes to injured

cardiac tissue. As inflammatory macrophage processes are required to clear senescent cells, mLOY may result

in the accumulation of senescent cells in tissues and thereby contribute to biological aging. Additionally, mLOY

macrophages show increased expression of Tgfb1, which can induce a mesenchymal transition in endothelial

cells and promote tissue fibrosis. Therefore, mLOY may promote this mesenchymal transition in aged tissues.

Finally, the effector locus on the Y chromosome that may be responsible for the cardiac fibrosis phenotype is a

gene with histone modification function. This effector locus may regulate macrophage polarization through

histone modifications that allow for transcription factor binding and subsequent expression of pro-fibrotic genes.

Thus, I hypothesis that mLOY promotes aging phenotypes by accumulation of senescent cells and promotion

of mesenchymal transition through epigenetic modification of histones to dysregulate macrophage polarization.

To this end, I will use novel transgenic mouse models, advanced single cell analyses, and cell culture methods

to determine the effects of mLOY macrophages on aging phenotypes and to elucidate the mechanisms by

which mLOY regulates macrophage polarization. Within this transition project, my training plan will build on my

current expertise in cell biology and allow me to gain critical skills to establish and maintain an independent

research program investigating mLOY and aging phenotypes.

Grant Number: 5K22AG081323-02
NIH Institute/Center: NIH

Principal Investigator: Nicholas Chavkin

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