grant

Targeting the metastasis initiating cell in undifferentiated pleomorphic sarcoma

Organization DUKE UNIVERSITYLocation DURHAM, UNITED STATESPosted 6 Apr 2021Deadline 31 Mar 2027
NIHUS FederalResearch GrantFY202521+ years oldActinsAdultAdult HumanAfter CareAfter-TreatmentAftercareAntibodiesAutomobile DrivingBar CodesBiologicalBiological FunctionBiological ProcessCRISPRCRISPR/Cas systemCancersCell BodyCell LocomotionCell MigrationCell MovementCell SurvivalCell ViabilityCellsCellular MigrationCellular MotilityChIP SequencingChIP assayChIP-seqChIPseqClustered Regularly Interspaced Short Palindromic RepeatsComplexDataDeacetylaseDevelopmentDiagnosisDisease ProgressionDrugsEGFR BlockerEGFR InhibitorEGFR Tyrosine Kinase InhibitorEGFR inhibitionEGFR-TK InhibitorEndowmentEngraftmentEpidermal Growth Factor Receptor InhibitorEpidermal Growth Factor Receptor Tyrosine Kinase InhibitorEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessEventExpression SignatureExtremitiesFibroxanthosarcomaGEM modelGEMM modelGene ExpressionGene Expression ProfileGeneralized GrowthGenesGeneticGenetically Engineered MouseGrowthHDACHDAC AgentHDAC ProteinsHDAC inhibitorHDAC2HDAC2 geneHDAC3HDAC3 enzymeHDAC3 geneHeterogeneityHeterograftHeterologous TransplantationHistone AcetylationHistone DeacetylaseHistone Deacetylase InhibitorHistone deacetylase inhibitionHumanImmunoblottingImmunodeficient MouseIn VitroIn vivo analysisIndividualInterphase CellInvadedLabelLibrariesLimb structureLimbsLungLung ParenchymaLung Respiratory SystemLung TissueMMP InhibitorMMPsMalignant Fibrous HistiocytomaMalignant FibroxanthomaMalignant NeoplasmsMalignant Soft Tissue NeoplasmMalignant TumorMatrix Metalloproteinase InhibitorMatrix MetalloproteinasesMedicationMetastasisMetastasis to the LungMetastasizeMetastatic LesionMetastatic MassMetastatic NeoplasmMetastatic Neoplasm to the LungMetastatic TumorMetastatic Tumor to the LungMiceMice MammalsModern ManMurineMusNeoplasm MetastasisNon-TrunkNon-dividing CellNon-metastaticNondividing CellNonmetastaticOutcomePatientsPharmaceutical PreparationsPhenotypePopulationPrimary NeoplasmPrimary TumorPrognosisProliferatingPropertyRNA SeqRNA sequencingRNAseqRPD3-2RegulationResting CellRoleSarcomaSecondary NeoplasmSecondary TumorSoft tissue sarcomaStructure of parenchyma of lungTailTestingTissue GrowthTransplantationTumor CellUndifferentiated pleomorphic sarcomaVeinsWestern BlottingWestern ImmunoblottingWorkXenograftXenograft procedureXenotransplantationYAF1adulthoodamputated limbbarcodebehavior influencebehavioral influencebiologiccancer metastasiscancer progressioncell motilitychip modelchip systemchromatin immunoprecipitationchromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcolonization associated with lungcolonization in the lungcolonization within the lungdeep sequencingdevelopmentaldifferential expressiondifferentially expresseddrivingdrug/agententire genomeepigeneticallyfull genomegene expression patterngene expression signaturegenetic approachgenetic strategygenetically engineered mouse modelgenetically engineered murine modelhigh-throughput drug screeninghistone deacetylase 3histone methylationhuman diseasein vivoin vivo evaluationin vivo testinginhibitorinnovateinnovationinnovativeinsightlimb amputationlung colonizationlung metastasislung volumemalignancymalignant soft tissue fibrous histiocytomamalignant soft tissue tumormembermetastasize to the lungmouse modelmurine modelneoplasm progressionneoplasm/cancerneoplastic cellneoplastic progressionnew therapeutic approachnew therapeutic interventionnew therapeutic strategiesnew therapy approachesnew treatment approachnew treatment strategynovelnovel therapeutic approachnovel therapeutic interventionnovel therapeutic strategiesnovel therapy approachon a chipon chipontogenyorgan chiporgan on a chiporgan on chippharmacologicpost treatmentprotein blottingpulmonary colonizationpulmonary metastasisscRNA sequencingscRNA-seqself-renewself-renewalsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial roletargeted agenttranscriptional differencestranscriptional profiletranscriptional signaturetranscriptome sequencingtranscriptomic sequencingtransplanttumortumor cell metastasistumor growthtumor initiationtumor progressiontumor xenograftwhole genomexeno-transplantxeno-transplantationα Tubulin
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Full Description

Undifferentiated pleomorphic sarcoma (UPS) is a soft tissue sarcoma, with one of the worst prognosis. We will
build on our discovery that UPS contains a small subpopulation of metastasis initiating cells (MCs) that are

enhanced for their ability to form metastasis. Our proof of principle data showed that targeting genes

differentially expressed in the MC population inhibits metastasis in UPS tumors established as xenografts in

mice. In our preliminary data, we show that epigenetic changes distinguish the MC from the rest of the UPS

cell populations. Furthermore, we found that individual cell populations in UPS produce secreted factors that

influence behavior of other cell UPS cell populations, acting in a competitive manner. Our hypothesis is that

the MC population is maintained by epigenetic changes that endow this subpopulation of cells with distinct

properties that drive sarcoma metastasis. We will test this hypothesis by answering the following two

questions:

1) What drives the MC population? Here we will build on our preliminary data suggesting that

epigenetic events driven by the regulation of histone acetylation and methylation maintain the MC. The function

of differentially expressed genes in the MC in regulating metastatic ability will be assessed using a lung organ

on a chip assay and findings will be tested in-vivo in murine tumors.

2) Can pharmacologically targeting the MIC population be used to treat UPS? Here we will build

on our gene expression data, CRISPER screens, and results from a high throughput drug screen to identify

agents that target the MC. Pharmacologic agents and genetic approaches in murine tumors and human

primary UPS tumors established as xenografts in immunodeficient mice to determine their effect on disease

progression and metastasis.

This proposed work utilizes unique mouse models of sarcoma and human tumors to test novel biologic

processes related to cellular heterogeneity in sarcoma. As such, it will provide important biologic insights not

only about UPS, but also about cell heterogeneity in cancer in general. In addition, it will lead to the

development of new treatment approaches for UPS, a tumor with a poor outcome using currently available

therapies.

Grant Number: 5R01CA251407-05
NIH Institute/Center: NIH

Principal Investigator: Benjamin Alman

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