grant

Targeting H4K20 methylation to rejuvenate aged stem cell epigenome and regenerative function.

Organization UNIVERSITY OF WISCONSIN-MADISONLocation MADISON, UNITED STATESPosted 15 Jun 2022Deadline 31 Aug 2027
NIHUS FederalResearch GrantFY202521+ years oldATAC sequencingATAC-seqATACseqAcuteAdultAdult HumanAffectAgeAge MonthsAge related comorbiditiesAgingAssay for Transposase-Accessible Chromatin using sequencingAutoregulationBCEIBlood PlasmaBlood Precursor CellBody TissuesBreast Cancer Estrogen-Inducible SequenceCell BodyCell Communication and SignalingCell CountCell Culture SystemCell NumberCell SignalingCellsChromatinChronicDNA Polymerase IIDNA Polymerase epsilonDNA-Dependent DNA Polymerase IIDNA-Dependent RNA Polymerase IIDataData CollectionDevelopmentDysfunctionEC 2.1.1EXTMRElderlyEnvironmentEnzyme GeneEnzymesEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessEventExerciseExtramuralExtramural ActivitiesFlow CytofluorometriesFlow CytofluorometryFlow CytometryFlow MicrofluorimetryFlow MicrofluorometryFunctional disorderFundingFutureGastrointestinal Trefoil Protein PS2Gene ExpressionGene InactivationGene SilencingGene TranscriptionGenesGenetic ModelsGenetic TranscriptionGenomicsGoalsHealth BenefitHematopoietic Progenitor CellsHematopoietic stem cellsHistone H4HomeostasisHumanImageImpairmentIndividualInflammationInflammatoryInjuryIntracellular Communication and SignalingKO miceKnock-out MiceKnockout MiceL-LysineL-SerineLigandsLysineMaintenanceMammaliaMammalsMeasuresMediatingMentorsMentorshipMethylationMethyltransferaseMiceMice MammalsModelingModerate ExerciseModern ManModificationMolecularMurineMusMuscleMuscle TissueNatural regenerationNon-Polyadenylated RNANull MousePhasePhenotypePhosphorylationPhysiologicPhysiologicalPhysiological HomeostasisPhysiopathologyPlasmaPlasma SerumPol IIPositionPositioning AttributeProcessProductivityProgenitor CellsProtein PhosphorylationQOLQuality of lifeRNARNA ExpressionRNA Gene ProductsRNA Polymerase BRNA Polymerase IIRNA SeqRNA sequencingRNAseqReactionRecoveryRegenerationRegenerative capacityRegulationRegulator GenesRegulatory ElementRejuvenationReportingRepressionResearchResting progenitorReticuloendothelial System, Serum, PlasmaRibonucleic AcidRoleRunningSerineSignal TransductionSignal Transduction SystemsSignalingSkeletal MuscleSkeletal muscle injurySortingStimulusTFF1TFF1 geneTamoxifenTechniquesTestingTissuesTrainingTranscriptionTranscription Initiation SiteTranscription Start SiteTranscriptional ControlTranscriptional RegulationTranscriptional Regulatory ElementsTrefoil Factor 1Voluntary MuscleWorkadult progenitoradult stem celladulthoodadvanced ageage associatedage associated comorbiditiesage correlatedage dependentage linkedage relatedage specificagedaged miceaged mouseaged muscleagesaging associated diseaseaging associated disordersaging of muscleaging related diseaseaging related disordersassay for transposase accessible chromatin followed by sequencingassay for transposase accessible chromatin seqassay for transposase accessible chromatin sequencingassay for transposase-accessible chromatin with sequencingbiological signal transductionblood cell progenitorblood progenitorblood stem cellblood-forming stem cellcareercell regenerationcellular regenerationcytokinedevelopmentaldisease associated with agingdisease of agingdisorder of agingdisorders associated with agingdisorders related to agingdormant stem cellelderly miceepigenetic regulationepigeneticallyepigenomeepigenomicsflow cytophotometrygenetic trans acting elementgenome scalegenome wide analysisgenome wide studiesgenome-widegenome-wide analysisgenome-wide identificationgenomewidegeriatrichealthy aginghealthy human aginghematopoietic progenitorhematopoietic stem progenitor cellhemopoietic progenitorhemopoietic stem cellimagingimprovedinactive stem cellinduced Creinducible Creinjuriesinsightlarge data setslarge datasetslatent progenitorlatent stem cellmethylasemoderate physical activitymouse geneticsmuscle agingmuscle progenitormuscle progenitor cellmuscle regenerationmuscle stem cellmuscularnotchnotch proteinnotch receptorsnovelold micepS2pathophysiologypreservationpreventpreventingprogenitor agingprogenitor biologyprogenitor cell agingprogenitor cell based therapyprogenitor cell biologyprogenitor cell fateprogenitor cell functionprogenitor cell poolprogenitor cell populationprogenitor cell therapyprogenitor cell treatmentprogenitor fateprogenitor functionprogenitor poolprogenitor populationprogenitor therapyprogenitor treatmentprogramspromoterpromotorquiescent progenitorquiescent stem cellsregenerateregenerate new tissueregenerate tissueregenerating damaged tissueregenerating tissueregeneration abilityregeneration capacityregeneration functionregenerative functionregenerative functionalityregulatory generesponseresting stem cellrestorationsedentaryself-renewself-renewalsenior citizenskillssmall molecular inhibitorsmall molecule inhibitorsocial rolesomatic progenitorsomatic stem cellstem and progenitor biologystem and progenitor cell fatestem and progenitor cell functionstem and progenitor cell populationstem and progenitor cell therapystem and progenitor functionstem cell agingstem cell based therapystem cell biologystem cell fatestem cell functionstem cell mediated therapystem cell poolstem cell populationstem cell quiescencestem cell therapeuticsstem cell therapystem cell treatmentstem cell-based therapeuticstem cell-based treatmentstem cellstissue regenerationtissue regrowthtissue renewaltissue specific regenerationtrans acting elementtranscriptional silencingtranscriptome sequencingtranscriptomic sequencingtranslational medicinetransmethylase
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Full Description

ABSTRACT
As we age, the intrinsic ability of stem cells to self-renew and differentiate to maintain tissue integrity dramatically declines.

Therefore, understanding the processes leading to stem cell dysfunction with age is essential for the future development of

novel, effective stem cell-based therapies to treat disorders associated with aging. Therefore, my long-term goal is to

elucidate the epigenetic mechanisms of stem cell aging, manipulate them to rejuvenate aged tissue, and promote healthy

aging. More specifically, the insight provided by this proposal would be used to devise strategies to rejuvenate muscle and

hematopoietic stem cell function, and therefore promote skeletal muscle recovery and reduce age-associated systemic low-

grade chronic inflammation. To accomplish this objective, we will utilize mouse genetic models, models of skeletal muscle

degenerative injury and moderate exercise (voluntary wheel running; VWR), cell culture systems, imaging analysis, small

molecule inhibitors, flow cytometry analysis, physiological measures of recovery, genomics, and epigenomics (Cleavage

Under Targets and Tagmentation; CUT&Tag). In aged mice, both muscle stem cell (MuSC) and hematopoietic stem and

progenitor cell (HSPC) quiescence is disrupted, leading to reduced regenerative capacity. Recent studies used VWR to

restore quiescence and rejuvenate both MuSC and HSPC function in aged mice. The epigenetic landscape in both stem cell

populations changes dramatically, yet the mechanisms underlying these events as well as their contribution to age-associated

dysfunction remain understudied. The lysine methyltransferase 5a (Kmt5a) is the sole enzyme catalyzing monomethylation

of lysine 20 on histone H4 (H4K20me1), which is required for subsequent di- and tri-methylation by Kmt5b and Kmt5c,

respectively. Methylation of H4K20 is critical for chromatin organization and regulation of transcription, yet its role in adult

stem cells is entirely unknown, especially in the context of aging. Our preliminary data show that Kmt5a and H4K20me1

decrease in aged MuSCs. Specific deletion of Kmt5a in MuSCs recapitulates aging phenotype by decreasing the pool of

stem cells, suggesting disruption of quiescence and impaired self-preservation of the pool. Using the recently developed

epigenomic technique CUT&Tag, we assessed H4K20me1 in adult and aged quiescent MuSCs and found that H4K20me1

is mostly located at the genes’ transcriptional start site and significantly decreases with age. Further analysis revealed that

age-associated loss of H4K20me1 silenced numerous Notch genes including Rbpj, critical to maintaining MuSC quiescence.

Significantly, Kmt5a inhibition and subsequent loss of H4K20me1 in MuSCs led to decreased RNA Polymerase II serine 2

phosphorylation, suggesting the impaired release of promoter-proximal pausing and therefore potent gene silencing. Thus,

we propose to examine if the loss of Kmt5a, and consequently H4K20me1, in aging MuSCs contributes to the disruption of

their quiescence state. Also, we will determine the role of Kmt5a in regulating RNA Polymerase II promoter-proximal

pausing, and how this proposed mechanism contributes to controlling MuSC fate and function. Last, we will determine if

moderate exercise using a VWR model can rejuvenate MuSC and HSPC epigenome through the restoration of H4K20

methylation. The specific aims of this proposal are: 1) Determine the role of Kmt5a in MuSC quiescence regulation during

aging and 2) Determine the impact of VWR on Kmt5a-mediated epigenetic remodeling in aged MuSC and aged HSPC.

Grant Number: 5R00AG071736-04
NIH Institute/Center: NIH

Principal Investigator: Romeo Blanc

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