grant

Small molecule approach to activate human SIRT5

Organization VIRGINIA COMMONWEALTH UNIVERSITYLocation RICHMOND, UNITED STATESPosted 1 May 2022Deadline 31 Jan 2027
NIHUS FederalResearch GrantFY20253-PyridinecarboxamideAcetylationAchievementAchievement AttainmentActivation AnalysisAllosteric RegulationApoptosisApoptosis PathwayArchaeaArchaebacteriaArchaeobacteriaArchaeonAssayBindingBinding SitesBioassayBiochemicalBiogenesisBiologicalBiological AssayBiological FunctionBiological ProcessBiologyBiophysicsCaloric RestrictionCaloriesCalorimetryCardiac healthCardiovascular DiseasesCatalytic CoreCatalytic DomainCatalytic RegionCatalytic SiteCatalytic SubunitCell BodyCell FunctionCell PhysiologyCell ProcessCellsCellular FunctionCellular PhysiologyCellular ProcessCellular RegulationChemicalsCombining SiteComplementComplement ProteinsCoupledDNA Damage RepairDNA RepairDataDeacetylaseDeacetylationDegenerative Neurologic DisordersDetectionDevelopmentDiabetes MellitusDockingDrugsElectrostaticsEnzyme ActivationEnzyme GeneEnzyme KineticsEnzymesFamilyFliesGene Copy NumberGene DosageGene InactivationGene SilencingGoalsHPLCHealthHealth BenefitHeart healthHigh Performance Liquid ChromatographyHigh Pressure Liquid ChromatographyHigh Speed Liquid ChromatographyHumanIncrease lifespanInosine PhosphorylaseIntakeInvestigationKnowledgeLength of LifeLibrariesLigandsLongevityMammaliaMammalsMediatingMedicationMetabolicMetabolic DiseasesMetabolic DisorderMetabolic PathwayMiceMice MammalsMitochondriaModern ManModificationMolecularMolecular InteractionMurineMusNAD-Dependent Protein DeacetylasesNatureNerve CellsNerve UnitNervous System Degenerative DiseasesNeural CellNeural Degenerative DiseasesNeural degenerative DisordersNeurocyteNeurodegenerative DiseasesNeurodegenerative DisordersNeurologic Degenerative ConditionsNeuronsNiacinamideNicotinamideNicotinamidumNicotinic acid amideNicotylamideNucleic Acid Regulator RegionsNucleic Acid Regulatory SequencesOrganic SynthesisOrganismOrigin of LifeOutcomePathologyPellagra-Preventing FactorPharmaceutical PreparationsPhotoaffinity LabelsPhysiologicPhysiologicalPlayPreventionProgrammed Cell DeathProtein ArrayProteinsPurine-Nucleoside PhosphorylaseReactive SiteRegulationRegulatory RegionsRoleSIRT1SIRT1 geneSeriesSilent Mating Type Information Regulator 2-like ProteinsSingle Crystal DiffractionSir2-like DeacetylasesSir2-like ProteinsSirtuin 1SirtuinsSite-Directed MutagenesisSite-Specific MutagenesisSpecificityStimulusStressStructureStructure-Activity RelationshipSubcellular ProcessTargeted DNA ModificationTargeted ModificationTestingTherapeuticThesaurismosisTimeTitrationsTumor Suppressor ProteinsUnscheduled DNA SynthesisVitamin B 3Vitamin B3Vitamin PPWorkX Ray CrystallographiesX-Ray CrystallographyX-Ray Diffraction CrystallographyX-Ray/Neutron CrystallographyXray CrystallographyYeastsactivity-based protein profilingage associated diseaseage associated disorderage associated impairmentage dependent diseaseage dependent disorderage dependent impairmentage related human diseaseage-related diseaseage-related disorderage-related impairmentanalogbiologicbiophysical foundationbiophysical principlesbiophysical sciencesboost longevitycalorie restrictioncardiovascular disordercell growth regulationcellular targetingchemical structure functioncomplementationdegenerative diseases of motor and sensory neuronsdegenerative neurological diseasesdesigndesigningdevelopmentaldiabetesdihydronicotinamidedrug/agentelongating the lifespanenhance longevityenzyme activityexperimentexperimental researchexperimental studyexperimentsextend life spanextend lifespanextend longevityflyfoster longevitygenetic regulatory elementhalogenationimprove lifespanimprove longevityimprovedin vitro Assayin vitro testingin vivoinnovateinnovationinnovativeinsightinsulin secretioninterestlifespan extensionliving systemmetabolism disordermitochondrialmodel organismmutantneurodegenerative illnessneuronalnew drug treatmentsnew drugsnew pharmacological therapeuticnew therapeuticsnew therapynext generationnext generation therapeuticsnicotinamide ribonucleosidenicotinamide ribosenicotinamide ribosidenicotinamide-beta-ribosidenovelnovel drug treatmentsnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel therapeuticsnovel therapypreservationprolong lifespanprolong longevitypromote lifespanpromote longevityrational designresponseribosidescaffoldscaffoldingscreeningscreeningssmall moleculesmall molecule therapeuticssocial rolestructural determinantsstructural factorsstructure function relationshipsupport longevitysynthetic peptidetherapeutic candidatetooltranscriptional silencingtumor suppressor
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Full Description

ABSTRACT
The “magnificent seven” human sirtuins play critical roles in various cellular processes including DNA

repair, gene silencing, mitochondrial biogenesis, insulin secretion and apoptosis. They regulate a wide array of

protein and enzyme targets through their NAD+-dependent deacetylase activities. Sirtuins are also thought to

mediate the beneficial effects of low calorie intake to extend longevity in diverse organisms from yeast to

mammals. Small molecules mimicking calorie restriction to stimulate sirtuin activity are attractive therapeutics

against age-related disorders such as cardiovascular diseases, diabetes and neurodegenerative diseases. Little

is known about one of the mitochondrial sirtuins, SIRT5. SIRT5 has emerged as a critical player in maintaining

cardiac health and neuronal viability upon stress, and functions as tumor suppressor in a context specific manner.

Much has been debated about whether SIRT5 has evolved away from being a deacetylase because of its weak

catalytic activity, especially in the in vitro testing. We have, for the first time, identified a SIRT5-selective allosteric

activator, nicotinamide riboside (NR). It can increase SIRT5 deacetylation efficiency with different synthetic

peptide substrates as well as its endogenous cognate substrate. However, the deacylase activity of SIRT5 is

insensitive to NR activation. Mechanism of activation will be further explored in three specific aims. In aim 1, our

effort will be directed at the elucidation of structural determinants required for the differential NR sensitivities and

the identification of allosteric binding site. In aim 2, target engagement and activation of SIRT5 in response to

activator treatment in the cellular context will be investigated. In aim 3, several series of SIRT5 activators will be

synthesized based on our initial screening, structure-activity relationship analysis and docking studies using a

combination of chemical and enzymatic strategies. The knowledge gained in the proposed study will not only

clarify our understanding of the biological functions of SIRT5, but also lead to new therapeutics for metabolic

disorders and age-related diseases.

Grant Number: 5R01GM143176-04
NIH Institute/Center: NIH

Principal Investigator: Yana Cen

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