grant

Regulation of Hemoglobin Switching

Organization CHILDREN'S HOSP OF PHILADELPHIALocation PHILADELPHIA, UNITED STATESPosted 5 Aug 2013Deadline 31 Jan 2027
NIHUS FederalResearch GrantFY202521+ years oldActive Follow-upAdultAdult HumanAnimal ModelAnimal Models and Related StudiesAnimalsAssayB-thalassemiaBCL11A geneBasal Transcription FactorBasal transcription factor genesBasic ResearchBasic ScienceBindingBioassayBiological AssayBiological FunctionBiological ProcessBiologyBlood DiseasesBlood Precursor CellBlood erythrocyteCRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCUT&RUNCas nuclease technologyCell BodyCell Culture TechniquesCellsChIP SequencingChIP-seqChIPseqChromatinCleavage Targets and Release Using NucleaseCleavage Under Targets and Release Using NucleaseClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyComplementComplement ProteinsCord BloodCore FacilityCultured CellsDNA BindingDNA Binding InteractionDNA TherapyDNA boundDataDedicationsDevelopmentDevelopmental GeneERYF1ElementsEngraftmentEnhancer ElementsEnhancersErythroblastsErythrocytesErythrocyticErythroidErythroid CellsFetal HbFetal HemoglobinFetal LiverFoundationsGATA Binding Protein 1GATA-1GATA1GATA1 geneGATA1 proteinGATA1 transcription factorGF-1 proteinGene ExpressionGene TranscriptionGene Transfer ClinicalGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGeneticGenetic Enhancer ElementGenetic InterventionGenetic ScreeningGenetic TranscriptionGlobinGoalsHb SS diseaseHbFHbSS diseaseHematologic DiseasesHematological DiseaseHematological DisorderHematopoiesisHematopoietic Cellular Control MechanismsHematopoietic Progenitor CellsHematopoietic stem cellsHemoglobinHemoglobin FHemoglobin S DiseaseHemoglobin sickle cell diseaseHemoglobin sickle cell disorderHemoglobinopathiesHeterozygoteHistonesHumanIn VitroKO miceKnock-out MiceKnockout MiceKnowledgeMarrow erythrocyteMeasurementMeasuresMediatingMessenger RNAMiceMice MammalsModelingModern ManMolecularMolecular InteractionMurineMusNF-E1 erythroid-specific transcription factorNFE1 proteinNormoblastsNuRDNuRD complexNucleated ErythrocytesNucleated red blood cellNucleated red cellNull MouseOutcomePatientsProcessProductionProteinsRNA ExpressionRNA SeqRNA sequencingRNAseqRed Blood CellsRed CellRegulationRegulatory ElementReporterReportingRepressionRoleSCL Transcription FactorSickle Cell AnemiaSolidStem Cell Leukemia Hematopoietic Transcription FactorStem Cell ProteinT-Cell Acute Lymphocytic Leukemia 1 GeneT-cell acute lymphocytic leukemia 1 proteinTAL1TAL1 Gene ProductTAL1 geneTCL5ThalassemiaTherapeuticTranscriptionTranscription Factor GATA1Transcription Factor Proto-OncogeneTranscription RepressorTranscription factor genesTranscriptional ControlTranscriptional RegulationTranscriptional RepressorTranslatingUmbilical Cord BloodUpregulationXenograft ModelYolk Sacactive followupadulthoodbeta Thalassemiablood cell formationblood cell progenitorblood corpusclesblood disorderblood progenitorblood stem cellblood-forming stem cellcell culturecell culturescell typechromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcofactorcomplementationdevelopmentalenhancer sequenceexperimentexperimental researchexperimental studyexperimentsfascinatefetalfetal cord bloodfetal form of hemoglobinfetal globinfollow upfollow-upfollowed upfollowupgain of functiongene repair therapygene therapygene-based therapygenetic enhancer sequencegenetic repressorgenetic therapygenomic therapyglobal gene expressionglobal transcription profileglobin transcription factor 1hematopoietic progenitorhematopoietic stem progenitor cellhemopoietic progenitorhemopoietic stem cellheterozygosityhistone modificationimproved outcomein vivoinsightinterestloss of functionmRNAmodel of animalnew drug treatmentsnew drugsnew pharmacological therapeuticnew therapeuticsnew therapynext generation therapeuticsnovelnovel drug treatmentsnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel therapeuticsnovel therapynuclear factor-erythroid 1nucleated RBCsoffspringoverexpressoverexpressionp-Globinp-Thalassemiaposttranscriptionalprogramspromoterpromotorsickle cell diseasesickle cell disordersickle diseasesicklemiasocial roletranscription factortranscription factor NFE-1transcriptometranscriptome sequencingtranscriptomic sequencingvitelline sacxenograft transplant modelxenotransplant modelβ-thalassemia
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Full Description

Abstract
One of the oldest and most deeply studied problems in developmental gene expression is the switch from fetal

to adult type hemoglobin in red blood cell precursors. Interest in this question has been fueled by its relevance

to genetic blood disorders such as sickle cell disease and thalassemia, and knowledge about regulatory

processes is being translated into gene therapies and other therapeutic approaches. BCL11A is a critical

player in the globin switch, but how it is regulated developmentally is surprisingly still largely unclear. Our

preliminary data show that BCL11A is controlled predominantly at the transcriptional level. Via a CRISPR-Cas9

genetic screen we identified the transcriptional repressor HIC2 as a novel regulator of hemoglobin switching.

HIC2 is expressed highly in fetal erythroid cells and extinguished in adult erythroid cells. Our preliminary data

further suggest that HIC2 represses BCL11A transcription specifically in fetal type cells by directly

decommissioning a fetal stage-specific BCL11A enhancer element. Together, these observations define the

foundational hypothesis of this application: HIC2 expression is extinguished in adult red cells, allowing for the

activation of a BCL11A enhancer to boost BCL11A expression in adult cells and trigger the silencing of fetal

type globin genes. This places HIC2 upstream of BCL11A in the regulatory circuitry that controls hemoglobin

switching. Additional preliminary data suggest that HIC2 promotes a broader fetal transcriptional program. In

Specific Aim 1 we will examine the biology of HIC2 in gain- and loss-of-function experiments in vivo using a

combination of cell culture models and whole animal studies. Specific Aim 2 is focused on mechanistic

experiments, defining the way by which HIC2 regulates chromatin features and transcription factor binding at

target genes, including BCL11A, and what HIC2 co-factors are involved. Specific Aim 3 is dedicated to

defining the developmental control of HIC2 expression. This will be accomplished by characterizing the

regulatory landscape of the HIC2 locus in fetal and adult erythroblasts in combination with developmental

stage specific perturbative experiments.

In sum, the proposed studies aim to understand the role of HIC2 in hemoglobin switching and in the

establishment of a fetal erythroid state at an organismal and molecular level. This proposal is expected to

produce results with ramifications for a broader understanding of developmental hematopoiesis as well as the

treatment of sickle cell disease and thalassemia.

Grant Number: 5R01HL119479-12
NIH Institute/Center: NIH

Principal Investigator: Gerd Blobel

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