grant

Rapid-Response Crystallography

Organization UNIVERSITY OF CALIF-LAWRENC BERKELEY LABLocation BERKELEY, UNITED STATESPosted 1 Sept 2017Deadline 31 Aug 2027
NIHUS FederalResearch GrantFY2025Active Follow-upAddressAutomatic Data ProcessingAutomationBiologicalCOVID crisisCOVID epidemicCOVID pandemicCOVID-19COVID-19 crisisCOVID-19 epidemicCOVID-19 eraCOVID-19 global health crisisCOVID-19 global pandemicCOVID-19 health crisisCOVID-19 pandemicCOVID-19 periodCOVID-19 public health crisisCOVID-19 yearsCV-19CaliforniaComputer Data ProcessingConsultationsCoronavirus Infectious Disease 2019CrystallizationCrystallographiesCrystallographyDNA Molecular BiologyDataData AnalysesData AnalysisData CollectionData SetDevelopmentElectronic Data ProcessingEnsureFeedbackHomeInfrastructureInstitutionInterventionIntuitionInvestigatorsManualsMethodsMolecularMolecular BiologyNational Institutes of HealthPositionPositioning AttributeProcessProductivityPublicationsResearch PersonnelResearch ResourcesResearchersResourcesRunningSARS-CoV-2 epidemicSARS-CoV-2 global health crisisSARS-CoV-2 global pandemicSARS-CoV-2 pandemicSARS-coronavirus-2 epidemicSARS-coronavirus-2 pandemicSamplingSan FranciscoScientific PublicationScientistSevere Acute Respiratory Syndrome CoV 2 epidemicSevere Acute Respiratory Syndrome CoV 2 pandemicSevere acute respiratory syndrome coronavirus 2 epidemicSevere acute respiratory syndrome coronavirus 2 pandemicSightStructural BiologistStructureSystemTechnologyTimeTriageUnited States National Institutes of HealthUniversitiesVisionactive followupautomated analysisautomated data processingbeamlinebiologicbiological systemsconsultationcoronavirus disease 2019coronavirus disease 2019 crisiscoronavirus disease 2019 epidemiccoronavirus disease 2019 global health crisiscoronavirus disease 2019 global pandemiccoronavirus disease 2019 health crisiscoronavirus disease 2019 pandemiccoronavirus disease 2019 public health crisiscoronavirus disease crisiscoronavirus disease epidemiccoronavirus disease pandemiccoronavirus disease-19coronavirus disease-19 global pandemiccoronavirus disease-19 pandemiccoronavirus infectious disease-19data accessdata exchangedata interpretationdata transferdata transmissiondevelopmentaldrug discoveryexperienceexperimentexperimental researchexperimental studyexperimentsfightingfollow upfollow-upfollowed upfollowuphomesinstrumentationintuitiveoperationoperationsprogramsresponserobotic systemsevere acute respiratory syndrome coronavirus 2 global health crisissevere acute respiratory syndrome coronavirus 2 global pandemicskillsstructural biologysuccesssynergismtooluser-friendlyvisual function
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Full Description

Technology Operations Core 1: Abstract
Technology Operations Core 1 (TOC1) of the ALS-ENABLE resource supports the rapid response to

macromolecular crystallography diffraction data collection. It joins forces, and groups together the effort and

expertise of three world-leading groups operating macromolecular crystallography beamlines at the ALS. They

are the Berkeley Center for Structural Biology (BCSB), the Molecular Biology Consortium (MBC) and the

University of California at San Francisco. The ALS-ENABLE facility includes eight macromolecular

crystallography beamlines with a broad range of capabilities to address all structural biology projects. NIH

investigators can request beamtime and, following a positive review, will get beamline access within a month.

Three modes of access are made available to users under the rapid response in TOC1. The vast majority of

users take advantage of the remote access capabilities available at all beamlines. Users ship their samples

and the ALS-ENABLE staff will prepare the beamline and load users’ samples in the robotic system. The

investigators will then operate the beamline from their home or institution for the acquisition of diffraction data.

A new mode of access proposed in this effort is to use the fully automated data collection pipeline. Here,

diffraction data are acquired automatically without manual intervention. This has been exploited heavily in

fragment-based drug discovery campaigns in the fight against COVID-19 pandemic. The automated data

collection pipeline has shown to be powerful and acquire diffraction datasets on crystals that appears to be

unusable. Users can also rely on the collaborative crystallography programs. More often novice structural

biologists will need help in their effort to determine the structure of biological molecules. Collaborative

crystallography relies on expert scientists available from the ALS-ENABLE staff to collect diffraction data on

their behalf. The range of provided expertise can start with guidance with crystallization up to publication of the

results. The collaborative crystallography program will also support the automated data collection pipeline by

identifying challenging projects that may need manual intervention. This will ensure that users are getting the

best diffraction data from their precious samples. Altogether TOC1 intends to quickly respond to the need of

macromolecular crystallography NIH investigators for access to diffraction data at the ALS.

Grant Number: 5P30GM124169-09
NIH Institute/Center: NIH

Principal Investigator: MARC ALLAIRE

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