grant

Protist Oxygen Sensing in Human Disease Protist Oxygen Sensing in Human Disease

Organization VIRGINIA POLYTECHNIC INST AND ST UNIVLocation BLACKSBURG, UNITED STATESPosted 1 Jul 2022Deadline 30 Jun 2027
NIHUS FederalResearch GrantFY2025APF-1ATP-Dependent Proteolysis Factor 1AddressAerobicAmericanAmino AcidsAssayAutoregulationBasal Transcription FactorBasal transcription factor genesBinding ProteinsBioassayBiochemicalBiological AssayBlood CirculationBloodstreamBody TissuesBrainBrain Nervous SystemCUL1CUL1 geneCalciumCell BodyCell FunctionCell PhysiologyCell ProcessCell SurvivalCell ViabilityCellsCellular FunctionCellular PhysiologyCellular ProcessCellular StressCellular Stress ResponseCharacteristicsComplexCuesCullin 1Cullin Domain ProteinCullin Family GeneCullin Family ProteinCullin ProteinsCullinsCystCytoplasmic Elongation Factor 2DataDevelopmentDictyosteliumDifferentiation and GrowthDiseaseDisorderDistantE3 LigaseE3 Ubiquitin LigaseElongation Factor 2EncephalonEnvironmentEssential Amino AcidsEukaryotic Translation Elongation Factor 2Exposure toF-Box Domain ProteinF-Box Protein FamilyF-Box ProteinsFaceFetusGeneral Transcription Factor GeneGeneral Transcription FactorsGeneralized GrowthGoalsGrowthHMG-20HeartHigh Mobility Protein 20HomeostasisHydroxylationHypoxiaHypoxia Inducible FactorHypoxicIFN-GammaIFN-gIFN-γIFNGIFNγImmune InterferonImmune responseImmunocompromisedImmunocompromised HostImmunocompromised PatientImmunosuppressed HostIn VitroInfectionInterferon GammaInterferon Type IIKinasesKnowledgeL-ProlineLearningLifeLigand Binding ProteinLigand Binding Protein GeneLigaseLigase GeneLungLung Respiratory SystemMediatingMedicalMetabolicModificationMuscleMuscle TissueNSP 100NSP100NamesNutrientO elementO2 elementOrganismOxygenOxygen DeficiencyParasitesPathway interactionsPeptide Elongation Factor 2Peptidyl Prolyl HydroxylasePhosphorylationPhosphotransferase GenePhosphotransferasesPhyA proteinPhysiological HomeostasisPolypeptidyl-tRNA TranslocasePolyubiquitinProcollagen Prolyl 4-HydroxylaseProcollagen-Proline DioxygenaseProliferatingProlineProline HydroxylaseProline,2-Oxoglutarate 4-DioxygenaseProlyl 4-HydroxylaseProlyl HydroxylaseProtein BindingProtein BiosynthesisProtein PhosphorylationProteinsProteomeProtocollagen Prolyl HydroxylaseProtozoaProtozoalPublishingRBX1RBX1 geneRING-Box 1ROC1Regulator of Cullins 1ResistanceRetinaRibosomal Peptide BiosynthesisRibosomal Protein BiosynthesisRibosomal Protein SynthesisShapesStressSubcellular ProcessSynthetasesT gondiiT. gondiiTestingTissue GrowthTissuesToxoplasmaToxoplasma gondiiTranscription Factor Proto-OncogeneTranscription factor genesTransphosphorylasesUbiquitilationUbiquitinUbiquitin Ligase Component GeneUbiquitin Ligase GeneUbiquitin Protein LigaseUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligase E3UbiquitinationUbiquitinoylationVirulenceWorkaminoacidbound proteincell stresscytokinedevelopmentalextracellularfacesfacialgenome analysishost responsehuman diseaseimmune system responseimmunoresponseimmunosuppressed patientin vivolFN-Gammaliving systemmuscularmutantnamenamednamingnew drug targetnew drug treatmentsnew druggable targetnew drugsnew pharmacological therapeuticnew pharmacotherapy targetnew therapeutic targetnew therapeuticsnew therapynew therapy targetnext generation therapeuticsnovel drug targetnovel drug treatmentsnovel druggable targetnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel pharmacotherapy targetnovel therapeutic targetnovel therapeuticsnovel therapynovel therapy targetontogenypathogenpathwayphyA gene productphyA phytochromephyB phytochromephyB proteinphytochrome Aphytochrome Bpoly-ubiquitinprotein synthesisrecruitresistantresponsetranscription factorubiquinationubiquitin conjugationubiquitin ligaseubiquitin-protein ligase
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Full Description

Sensing and responding to changes in environmental oxygen is critical for
aerobic organisms. Metazoans accomplish this by destabilizing a transcription

factor called hypoxia inducible factor (HIF) in oxygen sufficiency. This is achieved

by an oxygen-dependent prolyl 4-hydroxylase (PHD) that hydroxylates proline

residues in the HIF-1α transcription factor that targets it for ubiquitin-dependent

proteasomal degradation. Protozoans have PHDs but lack HIF and thus respond

to changes in oxygen differently and we use the evolutionary distant protists

Dictyostelium and Toxoplasma to address this question. Initial studies in

Dictyostelium revealed that its PHD, DdPHYa, modifies a proline in Skp1, which

is a component of the Skp1/Cullin1/F-box protein/Rbx1 polyubiquitin ligase

complex. Skp1 prolyl hydroxylation does not affect its stability, but allows it to be

modified by a pentasaccharide that acts to alter the repertoire of associated F-

Box proteins. Genome analysis and biochemical assays demonstrated that this

Skp1 modification pathway is conserved in the protozoan parasite Toxoplasma,

but not in metazoans. Loss of Toxoplasma PHYa leads decreases virulence in

vivo and decreased growth in vitro under limited O2 and amino acid conditions.

Unlike Dictyostelium, Toxoplasma expresses a second PHD, PHYb, which is

required for colonization of oxygen rich tissues as well as Toxoplasma growth at

high oxygen. In contrast to PHYa, PHYb functions by regulating elongation

during protein synthesis and specifically does so at elevated O2 levels. Because

of its medical importance, we will focus on Toxoplasma and pursue three specific

aims: i) Determine how PHYa mediates growth at low oxygen and amino acids;

ii) Define how PHYb regulates elongation; and iii) Test whether PHYa and PHYb

work in tandem as an oxygen-sensing rheostat to grow in whatever oxygen

tension in encounters as it infects a host and causes disease.

Grant Number: 5R01AI169849-05
NIH Institute/Center: NIH

Principal Investigator: Ira Blader

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