grant

Project 1: Elucidating the genetics and cell of origin of pancreatic cancer initiation

Organization STANFORD UNIVERSITYLocation STANFORD, UNITED STATESPosted 1 Aug 2021Deadline 31 Jul 2027
NIHUS FederalResearch GrantFY2025Acinar CellAciner CellsAffectAgingAllelesAllelomorphsAnti-OncogenesAntioncogene Protein p53AntioncogenesAutoregulationBar CodesC-K-RASCDK4ICDKN2CDKN2 GenesCDKN2ACDKN2A geneCMM2CRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCancer InductionCancer Suppressor GenesCancersCas nuclease technologyCell BodyCellsCellular Tumor Antigen P53Chromosome MappingClinicalClinical ManagementClinical TreatmentClonal ExpansionClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyCyclin-Dependent Kinase Inhibitor 2A GeneDNA mutationDPC4DataDeleted in Pancreatic CarcinomaDevelopmentDiseaseDisorderDrosophila Homolog of Mothers Against Decapentaplegic 4DuctDuct (organ) structureDuctal CellDuctal Epithelial CellEarly DiagnosisEarly treatmentEmerogenesEpithelial CellsEventEvolutionExpression SignatureGEM modelGEMM modelGene ExpressionGene Expression ProfileGene LocalizationGene MappingGene Mapping GeneticsGeneticGenetic ChangeGenetic DeterminismGenetic defectGenetic mutationGenetically Engineered MouseGenotypeHigh-Throughput Nucleotide SequencingHigh-Throughput SequencingHomeostasisHumanINK4INK4AImmuneImmunesImmunomodulationInvestigatorsK-RAS2AK-RAS2BK-RasK-Ras 2AK-Ras-2 OncogeneKRASKRAS driven oncogenesisKRAS oncogenesisKRAS(G12D)KRAS-driven tumorigenesisKRAS-mediated tumorigenesisKRAS2KRAS2 geneKRASG12DKi-RASKnowledgeLesionLinkage MappingMADH4MADH4 geneMTS1MTS1 GenesMalignant CellMalignant NeoplasmsMalignant Pancreatic NeoplasmMalignant TumorMalignant neoplasm of pancreasMeasuresMetaplasiaMetaplastic ChangeMiceMice MammalsModelingModern ManMolecularMurineMusMutateMutationOnco-Suppressor GenesOncogene K-RasOncogenes-Tumor SuppressorsOncogenicOncoprotein p53P53PanINPancreasPancreas CancerPancreas Ductal AdenocarcinomaPancreaticPancreatic CancerPancreatic Duct DysplasiaPancreatic Ductal AdenocarcinomaPancreatic Ductal DysplasiaPancreatic Intraepithelial NeoplasiaPancreatitisPathway interactionsPhosphoprotein P53Phosphoprotein pp53Physiological HomeostasisPositionPositioning AttributeProcessProtein TP53RASK2Recessive OncogenesRecurrenceRecurrentResearchResearch PersonnelResearchersRiskRisk FactorsRoleRouteSMA- and MAD-Related Protein 4SMAD4SystemTP16TP53TP53 geneTRP53TSG9ATestingTotal Human and Non-Human Gene MappingTumor Protein p53Tumor Protein p53 GeneTumor Suppressing GenesTumor Suppressor GenesTumor-Suppressor Gene InactivationVariantVariationViralalleviate symptomameliorating symptombarcodecancer carecancer cellcancer geneticscancer initiationcancer microenvironmentcarcinogenesiscell typechronic pancreatitisclinical interventionclinical therapydecrease symptomdesigndesigningdevelopmentalearly detectionearly therapyfewer symptomsgene expression patterngene expression signaturegenetic determinantgenetic mappinggenetically engineered mouse modelgenetically engineered murine modelgenome editinggenome mutationgenome sequencinggenomic editingglobal gene expressionglobal transcription profileimmune modulationimmune regulationimmunologic reactivity controlimmunomodulatoryimmunoregulationimmunoregulatoryimprovedin vivoinnovateinnovationinnovativeinsightmalignancymortalitymouse modelmurine modelmutantneoplasm/cancerneoplasticnoveloncogenic KRASoncosuppressor genep14ARFp16 Genesp16INK4 Genesp16INK4A Genesp16INK4ap53 Antigenp53 Genesp53 Tumor Suppressorpancreas duct dysplasiapancreas ductal dysplasiapancreatic malignancypathwayprecancerprecancerouspremalignantprotein p53recurrent pancreatitisreduce symptomsregenerativerelieves symptomsrepairrepairedscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial rolesomatic cell gene editingsomatic cell genome editingsomatic gene editingsomatic genome editingsymptom alleviationsymptom reductionsymptom reliefsynergismtranscriptional profiletranscriptional signaturetranscriptometransdifferentiationtrial regimentrial treatmenttumortumor initiationtumor microenvironmentv-Ki-RAS2 Kirsten Rat Sarcoma 2 Viral Oncogene Homolog
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Full Description

ABSTRACT (Project 1)
Pancreatic ductal adenocarcinoma (PDAC) is a prevalent and almost uniformly fatal malignancy. Human PDAC

genome sequencing has identified recurrent mutations in Kras and several major tumor suppressor genes

(TSGs), but the impact of these alterations in the initiation and evolution of human PDAC development remain

poorly understood at the molecular level. Understanding the basis of tumor initiation and development has critical

implications for improving early diagnosis and therapy. While PDACs were originally thought to arise from ductal

cells, evidence from mouse models suggests that acinar cells can give rise to PDACs through a regenerative,

transdifferentiation process known as Acinar to Ductal Metaplasia (ADM). ADM is stimulated by chronic

pancreatitis, a known risk factor for PDAC, and generates premalignant Pancreatic Intraepithelial Neoplasias

(PanINs), which lead to PDAC. Our preliminary data suggest that the p53 TSG can inhibit ADM and that p53

inactivation in acinar cells expressing oncogenic KrasG12D drives PDAC. However, expression of oncogenic

KrasG12D and p53 inactivation in ductal cells can also induce PDAC, suggesting alternate routes of PDAC

carcinogenesis. Interestingly, we find that acinar cell-derived and ductal cell-derived tumors resemble the

classical and basal-like subtypes of human PDAC, respectively. These results underscore the unique value of

mouse models in uncovering the determinants that dictate different paths of PDAC evolution to provide insight

into human PDAC. The roles of other common PDAC TSGs in early stage pre-neoplastic lesions, including

whether they normally function in acinar cells and/or ductal cells, however, remains unclear. Furthermore,

oncogenic Kras mutations are diverse in PDAC, yet it is unknown whether different mutations have distinct

impacts on PDAC development from different pancreatic epithelial cell types. We hypothesize that the cell type

of origin and tumor genotype cooperate to drive different paths of PDAC development, and to test this idea, we

will systematically inactivate several major PDAC TSGs and express different Kras alleles in both putative cell

types of origin. We will characterize the transcriptomes and the cellular milieu of early lesions and tumors and

employ innovative approaches like somatic genome editing and molecular barcoding. We will compare our

studies in tractable mouse models to studies of human PDAC development. Together, these transformative

studies will establish how genetic determinants and cell-of-origin influence the molecular pathways and the

cellular microenvironment during PDAC evolution in mice and humans, critical knowledge for better clinical

management of this deadly disease.

Grant Number: 5P01CA244114-05
NIH Institute/Center: NIH

Principal Investigator: LAURA ATTARDI

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