grant

Neural Operator Learning to Predict Aneurysmal Growth and Outcomes

Organization YALE UNIVERSITYLocation NEW HAVEN, UNITED STATESPosted 1 Apr 2023Deadline 31 Mar 2027
NIHUS FederalResearch GrantFY2025AcuteAdherenceAffectAlgorithmsAneurysmAortaAortic DiseasesArteriesAttentionBasic ResearchBasic ScienceBiomechanicsBiomedical EngineeringBody Surface AreaBody TissuesCaringCell Communication and SignalingCell SignalingCellular MechanotransductionCessation of lifeClinicalClinical DataClinical ManagementClinical ResearchClinical StudyClinical geneticsCollagenCollectionComputer ModelsComputerized ModelsConnectionist ModelsDNA mutationDataData AnalysesData AnalysisData BasesData SetDatabasesDeathDiameterDiseaseDisorderDissectionDistalDrug TherapyElastic FiberEmergenciesEmergency SituationEventFemaleFoundationsFrequenciesGene ModifiedGeneralized GrowthGenerationsGeneticGenetic ChangeGenetic PredispositionGenetic Predisposition to DiseaseGenetic SusceptibilityGenetic defectGenetic mutationGenetic propensityGoalsGrantGrowthGuidelinesHumanHypertensionImageIncidenceIndividualInherited PredispositionInherited SusceptibilityInterventionIntracellular Communication and SignalingKnowledgeLearningLesionLifeMachine LearningMechanical Signal TransductionMechanosensory TransductionMedical GeneticsMedical ImagingMedical SurveillanceMedicineMethodsMiceMice MammalsModelingModern ManMorbidityMorbidity - disease rateMurineMusMutationNatural HistoryNeural Network ModelsNeural Network SimulationOlder PopulationOperative ProceduresOperative Surgical ProceduresOutcomePaperPathologyPatient CarePatient Care DeliveryPatientsPerceptronsPersonsPharmacological TreatmentPharmacotherapyPhenocopyPhysiciansPhysicsPostdocPostdoctoral FellowPredicting RiskPredispositionPrevalencePrognosisProsthesisProsthetic deviceProstheticsRegulationResearchResearch AssociateResolutionRiskRisk FactorsRuptureSamplingScientistShapesSignal TransductionSignal Transduction SystemsSignalingStudentsSurgeonSurgicalSurgical InterventionsSurgical ProcedureSusceptibilitySyndromeTechniquesTestingThoracic Aortic AneurysmThoracic aortaTimeTissue GrowthTissuesTrainingUncertaintyUnited StatesVascular Hypertensive DiseaseVascular Hypertensive DisorderVascular agingWorkadversarial neural networkaortic disorderbio-engineeredbio-engineersbioengineeringbiological engineeringbiological signal transductionbiomechanic modelingbiomechanic simulationbiomechanicalbiomechanical modelbiomechanical modelingbiomechanical simulationbiophysical modelcare for patientscare of patientscaring for patientsclinical careclinical imagingcomputational modelingcomputational modelscomputer based modelscomputer based predictioncomputerized modelingdata basedata interpretationdata to traindataset to traindesigndesigningdisabilitydoubtdrug efficacydrug interventiondrug treatmentexperiencefallsforecasting riskgene modificationgenerative adversarial networkgenerative neural networkgenetic etiologygenetic mechanism of diseasegenetic vulnerabilitygenetically modifiedgenetically predisposedgenome mutationhigh blood pressurehuman datahyperpiesiahyperpiesishypertensive diseasehypertensive disorderimagingimprovedin silicoin vivoinnovateinnovationinnovativemachine based learningmachine learned algorithmmachine learning algorithmmachine learning based algorithmmachine learning prediction algorithmmalemechanosensingmechanotransductionmortalitymouse modelmurine modelneuralneural networknext generationnovelolder groupsolder individualsolder personontogenypharmaceutical interventionpharmacological interventionpharmacological therapypharmacology interventionpharmacology treatmentpharmacotherapeuticspost-docpost-doctoralpost-doctoral traineepredict riskpredict riskspredicted riskpredicted riskspredicting riskspredictive modelingpredictive riskpredicts riskprematureprematurityprophylacticprospectiverepairrepairedresearch associatesresolutionsrisk predictionrisk predictionssexsobersobrietysurgerysynthetic datatooltraining datavasculature aging
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Full Description

PROJECT SUMMARY
Despite continuing advances in medical genetics, medical imaging, and surgical interventions, thoracic aortic

aneurysms (TAAs) are increasingly responsible for significant morbidity and mortality. Large clinical studies

reveal the complexity of the disease, which typically presents sporadically in older individuals, with uncontrolled

hypertension amongst the key risk factors, while also presenting in younger individuals having genetic or

congenital predispositions. Standard methods (including multivariate regressions) have failed to improve

prediction of life-threatening acute aortic syndromes (dissection and rupture) and current AHA/ACC guidelines

based on maximum aortic diameter fail to predict risk. Further complicating the situation, recent data show that,

although life-saving, surgical repair of the proximal aorta with a prosthetic graft increases incidence of distal

aortic disease and acute events, thus emphasizing the need to time surgery appropriately – that is, either

unnecessary delays due to adherence to current guidelines or pre-mature intervention may increase risk to

patients. There is a dire need for a better approach for predicting thoracic aortic growth and potential outcomes.

This proposal is significant for it is designed to resolve this unmet clinical need; it is innovative for we propose a

novel mechanobiological and biomechanical data-driven approach to develop a next-generation (neural operator

based) machine learning tool that can better predict TAA growth and certain outcomes, including drug efficacy.

We will combine a novel repurposing of extant murine and human data, generation of ~25000 new synthetic data

sets, and collection of unique new murine data (12 models of TAAs) to identify the best machine learning

approach, then combine extant and prospective clinical imaging data (~300 patients) to train and test the final

neural network (a deep operator neural network, or DeepONet). Our proposed unique meta-learning framework

is simply not possible with standard neural networks. We will exploit multi-fidelity training so that both low

resolution data and relatively inaccurate models can be used in training when combined with high-fidelity real or

synthetic data and uncertainty quantification via functional priors (the most informative Bayesian priors) that are

learned by combining historical data, biophysical models, and GANs (generative adversarial networks). This

unique combination allows us to learn posteriors with few samples (e.g., 2 or 3 new medical images), hence

predictions can be made for new cases with minimal (clinical) information. This project is possible given our

highly collaborative team of physician-scientists, bioengineers, and applied mathematicians having a strong track

record of successful research (grants, papers) and training of diverse students, post-docs, and residents.

Grant Number: 5R01HL168473-03
NIH Institute/Center: NIH

Principal Investigator: Roland Assi

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