grant

Molecular Mechanisms of TRIB1 Regulation of Hepatic Metabolism

Organization COLUMBIA UNIVERSITY HEALTH SCIENCESLocation NEW YORK, UNITED STATESPosted 1 May 2023Deadline 30 Apr 2027
NIHUS FederalResearch GrantFY20268q24ACRP30 proteinAPF-1ATP-Dependent Proteolysis Factor 1AddressAnimal ModelAnimal Models and Related StudiesAnimalsAssayBasal Transcription FactorBasal transcription factor genesBindingBioassayBioinformaticsBiological AssayBiological MarkersBiologyBlood PlasmaC/EBP-alphaCEBPACEBPA geneCardiometabolic DiseaseCardiometabolic DisorderCell BodyCell LineCellLineCellsCholesterolClosure by LigationComplexCoronary ArteriosclerosisCoronary Artery DiseaseCoronary Artery DisorderCoronary AtherosclerosisCryo-electron MicroscopyCryoelectron MicroscopyDNADataData SetDeoxyribonucleic AcidDyslipidemiasE3 LigaseE3 Ubiquitin LigaseElectron CryomicroscopyEnzyme GeneEnzymesFatty LiverFunctional RNAGMO AnimalsGWA studyGWASGene ExpressionGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGeneticGenetically Modified AnimalsGenomeGlycohemoglobin AGlycosylated hemoglobin AGoalsHDL CholesterolHDL Cholesterol LipoproteinsHMG-20Hb A1Hb A1a+bHb A1cHbA1HbA1cHealthHemoglobin A(1)HepaticHepatic CellsHepatic Parenchymal CellHepatocyteHigh Density Lipoprotein CholesterolHigh Mobility Protein 20HumanHuman GeneticsHuman GenomeIn VitroIndividualKnock-outKnockoutKnowledgeLDL CholesterolLDL Cholesterol LipoproteinsLigationLimulus factor CLinkLipidsLiverLiver CellsLiver SteatosisLow Density Lipoprotein CholesterolMediatingMetabolicMetabolic DiseasesMetabolic DisorderMetabolic syndromeMiceMice MammalsModelingModern ManMolecularMolecular ConfigurationMolecular ConformationMolecular InteractionMolecular StereochemistryMurineMusMyeloid CellsNAFLDNoncoding RNANontranslated RNAOutcomeParticipantPathway interactionsPhenotypePhysiologyPlasmaPlasma SerumPopulationPre-Clinical ModelPrebeta-LipoproteinsPreclinical ModelsProcessProteinsProteomicsRNA SeqRNA sequencingRNAseqRegulationResearch ResourcesResourcesReticuloendothelial System, Serum, PlasmaRoleSafetySpecificityStrains Cell LinesStructureTOPMedTestingTherapeuticThesaurismosisTrans-Omics for Precision MedicineTranscription Factor Proto-OncogeneTranscription factor genesTransgenic MiceTreatment EfficacyTriacylglycerolTriglyceridesUbiquitilationUbiquitinUbiquitin Protein LigaseUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligase E3UbiquitinationUbiquitinoylationUntranslated RNAVLDLVLDL LipoproteinsVariantVariationVery low density lipoproteinWestern WorldWorkadipocyte complement-related protein 30-kDaadipocyte, C1q and collagen domain containing proteinadipogenesisadiponectinalpha-Lipoprotein CholesterolapM-1 proteinapM1 (adipose-specific) proteinatherosclerotic coronary diseasebeta-Lipoprotein Cholesterolbio-markersbiobankbiologic markerbiomarkerbiorepositorycardiometaboliccardiometabolismchronic hepatic diseasechronic hepatic disorderchronic liver diseasechronic liver disorderconformationconformationalconformational stateconformationallyconformationscoronary arterial diseasecryo-EMcryoEMcryogenic electron microscopycultured cell lineexome sequencingexome-seqexperimentexperimental researchexperimental studyexperimentsfactor Cfat metabolismgene locusgene manipulationgenetic associationgenetic locusgenetic manipulationgenetically manipulategenetically perturbgenome wide associationgenome wide association scangenome wide association studygenomewide association scangenomewide association studygenomic locationgenomic locushemoglobin A1chepatic body systemhepatic metabolismhepatic organ systemhepatic steatosishepatoma cellhepatosteatosishorseshoe crab factor Chuman diseasehuman whole genomein vivoinsightintervention efficacylipid biosynthesislipid metabolismlipogenesisliver functionliver metabolismloss of functionmetabolism disordermodel of animalmortalitymouse modelmurine modelmutantnon-alcohol fatty liver diseasenon-alcoholic fatty liver diseasenon-alcoholic liver diseasenonalcoholic fatty liver diseasenoncodingnoveloverexpressoverexpressionpathwayphenotypic datapleiotropic effectpleiotropismpleiotropypre-clinical studypreclinical studyprobandsocial rolesomatic cell gene editingsomatic cell genome editingsomatic gene editingsomatic genome editingstructural biologytherapeutic efficacytherapeutic evaluationtherapeutic testingtherapy efficacytraittranscription factortranscriptome sequencingtranscriptomic sequencingtranslational opportunitiestranslational potentialtranslational studyubiquinationubiquitin conjugationubiquitin-protein ligasewhole genome association analysiswhole genome association study
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Full Description

The 8q24 genomic locus, containing the gene Tribbles pseudokinase 1 (TRIB1) has been repeatedly linked via human genome-wide association study with multiple cardiometabolic parameters. This includes plasma total cholesterol, LDL cholesterol, HDL cholesterol, triglycerides, coronary artery disease (CAD), circulating liver enzymes and non-alcoholic fatty liver disease (NAFLD), circulating adiponectin, and HbA1c. This constellation of genetic associations is unique in the genome, and suggests that TRIB1 is a critical regulator of human metabolic health. Many of these traits are governed by hepatic metabolism, and knockout and overexpression studies in mice have demonstrated that Trib1 is a critical regulator of hepatic lipid metabolism.

Despite the genetic evidence supporting a role for this gene in human disease and early observations underscoring the importance of hepatic Trib1, mechanistic studies have lagged. Prior work in myeloid cells has established a model of TRIB1 function wherein it promotes the ubiquitination and degradation of the transcription factor C/EBPα, but the mechanisms governing this function have not been explored in hepatocytes. Additionally, while previous work demonstrated that hepatic Trib1 overexpression reduces plasma lipids in mice, this therapeutic paradigm has not been tested in preclinical models of cardiometabolic disease. Finally, the direction of effect of TRIB1 in humans remains unknown, hampering the translational and therapeutic potential of this gene and related pathways.

We present here preliminary data demonstrating that hepatic TRIB1 does promote COP1-dependent ubiquitination of the transcription factor C/EBPα, and this process requires a novel interaction with a different pseudokinase, STK40. Additionally, we have established multiple transgenic mice to test the therapeutic potential of increased hepatic Trib1 activity in animal models of metabolic disease. Finally, we have utilized existing whole exome sequencing in a highly novel consanguineous population to identify predicted loss-of-function (pLoF) variants in TRIB1 that can help determine its function in humans. This experimental plan aims to address the above outlined knowledge gaps through accomplishment of the following specific aims: 1)To determine how hepatic TRIB1-mediated ubiquitination of target proteins is regulated by STK40; 2)To determine the therapeutic benefit of Trib1 overexpression in animal models of CAD and NAFLD, and the requirement for C/EBPα for such benefits; and 3)To determine the direction of effect of TRIB1 through the identification of TRIB1 and CEBPA pLoF variants and determining their outcomes on human health via bioinformatics.

Completion of these aims will not only elucidate novel biology surrounding E3 ligases, pseudokinases, and TRIB1 therapeutic potential, but also further our understanding of the mechanistic underpinnings of the myriad human genetic associations with TRIB1. Our ultimate goal is an in depth understanding of hepatic TRIB1 function with the hope of informing therapeutic strategies targeting dyslipidemia and CAD, steatosis and NAFLD, and metabolic syndrome in humans.

Grant Number: 5R01DK134026-04
NIH Institute/Center: NIH

Principal Investigator: Robert Bauer

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