grant

Lineage Progression of Cortical Neural Stem Cells

Organization UNIVERSITY OF CALIFORNIA SANTA CRUZLocation SANTA CRUZ, UNITED STATESPosted 15 May 2015Deadline 31 Jul 2026
NIHUS FederalResearch GrantFY2025ATAC sequencingATAC-seqATACseqApplications GrantsAssay for Transposase-Accessible Chromatin using sequencingAstrocytesAstrocytusAstrogliaBasal Transcription FactorBasal transcription factor genesBindingBirthBrainBrain Nervous SystemBrain regionCNS Nervous SystemCUT&RUNCausalityCell BodyCell Communication and SignalingCell FunctionCell LineageCell LocomotionCell MigrationCell MovementCell PhysiologyCell ProcessCell SignalingCellsCellular FunctionCellular MigrationCellular MotilityCellular PhysiologyCellular ProcessCentral Nervous SystemCerebral cortexChIP SequencingChIP-seqChIPseqCleavage Targets and Release Using NucleaseCleavage Under Targets and Release Using NucleaseConnector NeuronDefectDevelopmentDrosophilaDrosophila genusEncephalonEnhancersEtiologyGametesGene ExpressionGene TranscriptionGeneral Transcription Factor GeneGeneral Transcription FactorsGenerationsGenesGenetic TranscriptionGerm CellsGerm-Line CellsGliaGlial CellsGlutamatesGoalsGrant ProposalsIndividualIntercalary NeuronIntercalated NeuronsInterneuronsInternuncial CellInternuncial NeuronIntracellular Communication and SignalingInvestigationKnowledgeKolliker's reticulumL-GlutamateMiceMice MammalsMolecularMolecular InteractionMultipotent Stem CellsMurineMusNerve CellsNerve UnitNeural CellNeural Stem CellNeuraxisNeurocyteNeurodevelopmental DisorderNeurogliaNeuroglial CellsNeurological Development DisorderNeuronsNeurosciencesNon-neuronal cellNonneuronal cellOligodendrocytesOligodendrocytusOligodendrogliaOligodendroglia CellOutcomeParturitionPathway interactionsPatternPopulationProcessProductionPublicationsRNA ExpressionRNA SeqRNA sequencingRNAseqRadialRadiusReportingReproductive CellsResearchScientific PublicationSex CellSignal TransductionSignal Transduction SystemsSignalingSpecific qualifier valueSpecifiedSubcellular ProcessTechnologyTestingTranscriptionTranscription Factor Proto-OncogeneTranscription RepressorTranscription factor genesTranscriptional RepressorVentricularassay for transposase accessible chromatin followed by sequencingassay for transposase accessible chromatin seqassay for transposase accessible chromatin sequencingassay for transposase-accessible chromatin with sequencingastrocytic gliabiological signal transductioncausationcell motilitycell typechromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcortical progenitorscortical stem celldevelopmentaldisease causationdisease preventiondisorder preventionexcitatory neuronfruit flygenetic repressorgliogenesisglutamatergichuman diseaseinitial cellinsightmacrogliamigrationmouse geneticsmultipotencymultipotentmultipotent progenitormultipotent progenitor cellnerve cementnerve stem cellneural circuitneural circuitryneural precursorneural precursor cellneural progenitorneural progenitor cellsneural stem and progenitor cellsneuroblastneurocircuitryneurodevelopmental diseaseneurogenesisneurogenic progenitorsneurogenic stem cellneuron progenitorsneuronalneuronal progenitorneuronal progenitor cellsneuronal stem cellsneuroprogenitorolfactory bulboligodendrocyte lineagepathwayprogenitorprogenitor and neural stem cellsprogenitor biologyprogenitor cell biologypromoterpromotorscRNA sequencingscRNA-seqsegregationsexual cellsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingstem and progenitor biologystem cell biologysynaptic circuitsynaptic circuitrytranscription factortranscriptome sequencingtranscriptomic sequencing
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Full Description

Formation of functional neural circuits depends on the proper generation of different
neuronal and glial cell types in the correct numbers and order. In the developing

mammalian central nervous system, multipotent neural stem cells initially produce

neurons, followed by glia. The cerebral cortex is the brain region that best exemplifies this

developmental theme. In the developing cortex, multipotent neural stem cells, known as

the radial glial cells (RGCs), sequentially generate the diverse cortical excitatory neuronal

subtypes that populate different cortical layers. At the end of cortical neurogenesis, the

RGCs switch lineages and generate inhibitory olfactory bulb interneurons, and both types

of cortical macroglia. The cellular process and molecular mechanisms that underlie this

lineage switch is not known. Lack of this knowledge hinders our effort to understand the

etiology of various neurodevelopmental disorders. In this grant application, we propose to

determine the lineage segregation patterns among OB interneuron, astrocyte and

oligodendrocyte lineages (Aim 1), to investigate whether Shh signaling regulates lineage

specification of cortical astrocytes (Aim 2), and to uncover the underlying molecular

mechanisms underlying the lineage switch of cortical RGCs (Aims 2 and 3). We will

combine mouse genetics, MADM and intersectional lineage analyses, RNA-seq, single-cell RNA-seq, ChIP-seq, CUT&RUN, ATAC-seq, and 4C technologies to achieve these

goals.

Grant Number: 5R01NS089777-10
NIH Institute/Center: NIH

Principal Investigator: Bin Chen

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