grant

Irx1 regulation of oral tissue repair and maintenance.

Organization UNIVERSITY OF IOWALocation IOWA CITY, UNITED STATESPosted 8 May 2025Deadline 7 May 2027
NIHUS FederalResearch GrantFY202521+ years oldAdultAdult HumanAffectAutoregulationBasal CellBasal LayerBasal Transcription FactorBasal transcription factor genesBirth DefectsBlood Coagulation Factor IIIBody TissuesBuccal CavityBuccal Cavity Head and NeckBuccal MucosaCD142 AntigensCadherin-1CancersCariesCavitas OrisCell BodyCell DifferentiationCell Differentiation processCell Growth in NumberCell MultiplicationCell ProliferationCellsCellular ProliferationChronicChronic PeriodontitisCicatrixCoagulation Factor IIICoagulinCongenital AbnormalityCongenital Anatomical AbnormalityCongenital DefectsCongenital DeformityCongenital MalformationDataDental DecayDental cariesDevelopmentDiseaseDisorderE-CadherinEGF Signaling PathwayEmbryo DevelopmentEmbryogenesisEmbryonic DevelopmentEpithelial AttachmentEpithelial Calcium-Dependent Adhesion ProteinEpithelial-CadherinEpitheliumFactor IIIFemaleGene Action RegulationGene ExpressionGene Expression RegulationGene RegulationGene Regulation ProcessGeneral Transcription Factor GeneGeneral Transcription FactorsGeneralized GrowthGenesGeneticGenotypeGingivaGingivalGingival InjuryGlomerular Procoagulant ActivityGoalsGrowthHealthHeterozygoteHomeo BoxesHomeoboxHomeostasisHumanImmunoblottingImmunofluorescenceImmunofluorescence ImmunologicImpairmentInflammationInjuryJunctional EpitheliumKO miceKnock-out MiceKnockout MiceLabelLacZLacZ GenesLeftLineage TracingMaintenanceMalignant NeoplasmsMalignant TumorMesenchymalMesenchymal Progenitor CellMesenchymal Stem CellsMesenchymal progenitorMesenchymal stromal/stem cellsMesenchymasMesenchymeMiceMice MammalsModelingModern ManMolecularMouthMouth DiseasesMouth MucosaMurineMusNatural regenerationNon-Polyadenylated RNANull MouseOralOral Cavity DiseaseOral Cavity DisorderOral DiseaseOral DisorderOral MucosaOral cavityOral mucous membrane structureOrofacial PainPainPainfulParadentiumPatternPeriodontitisPeriodontiumPersonal SatisfactionPersonsPhenotypePhysiological HomeostasisPopulationProcessProgenitor CellsProthrombinaseQOLQuality of lifeRNARNA Gene ProductsRNA SeqRNA sequencingRNAseqRegenerationRegulationReportingResearchRete MalpighiiRibonucleic AcidRoleSamplingScarsSideStaining methodStainsStratified EpitheliumStratum BasaleStratum GerminativumTamoxifenThromboplastinTimeTissue FactorTissue Factor ProcoagulantTissue GrowthTissue ThromboplastinTissuesTooth LossTooth Supporting StructuresTranscription Factor Proto-OncogeneTranscription factor genesUrothromboplastinUvomorulinWestern BlottingWestern ImmunoblottingWound Repairadulthoodbasebasescell lineage analysiscell lineage mappingcell lineage tracingcell lineage trackingcell typecellular differentiationcellular lineage mappingcellular lineage trackingchronic skin woundchronic woundconditional knock-outconditional knockoutcornificationcraniofacialcraniofaciesdevelopmentalepithelium regenerationexperimentexperimental researchexperimental studyexperimentsgene signaturesgenetic signaturehealingheterozygosityimprovedinduced Creinducible Creinjuredinjuriesinnovateinnovationinnovativekeratinizationkeratinocyte differentiationloricrinlung progenitorlung stem celllung tissue stem celllung-specific stem cellmalemalignancymesenchymal stromal cellmesenchymal stromal progenitor cellsmesenchymal-derived stem cellsmouth disorderneoplasm/cancerontogenyoral cavity epitheliumoral epitheliaoral epitheliumoral facial painoral mucosaeoral mucosaloral tissueprogenitor cell geneprogenitor cell markersprogenitor cell nicheprogenitor cells in the lungprogenitor geneprogenitor markersprogenitor nicheprogenitor stem cell markersprogenitors in the lungprotein blottingpulmonary progenitorpulmonary stem cellre-epithelializationregenerateregenerate epitheliumregenerate new tissueregenerate tissueregenerating damaged tissueregenerating tissuerepairrepairedsocial rolestem and progenitor cell nichestem cell biomarkersstem cell genesstem cell markersstem cell nichestem cellsstem cells in the lungtissue regenerationtissue regrowthtissue renewaltissue repairtissue specific regenerationtissue woundtooth decaytranscription factortranscriptome sequencingtranscriptomic sequencingtranscriptomicswell-beingwellbeingwoundwound closurewound healingwound recoverywound resolutionwoundingwounds
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Full Description

Project Summary
Oral disease causes a significant burden on overall health and 3.9 billion people are affected

worldwide. Oral diseases such as periodontitis, cancer, tooth loss, craniofacial birth defects and pain all affect

growth and maintenance of the oral cavity and oral mucosa. Improving oral wound healing due to diseases,

chronic wounding and scarring would greatly affect quality of life. The oral mucosa is primed with wound-

activated gene signatures to facilitate the rapid and scarless wound healing. However, the genetic and

molecular mechanism underlying this process is still largely unknown. We have found that Iroquois Homeobox

1 (IRX1/Irx1) is expressed in the basal layer of gingival epithelium and cell populations in the mesenchyme in

both murine and human samples, which indicates its potential role in regulating gingival wound healing.

Moreover, Irx1 expression may mark potential stem cell niches in the basal cell layer of the oral epithelium.

We are investigating the role of Irx1 in epithelial basal cells during gingival wound healing utilizing our

mouse gingival injury model. We have previously reported that Irx1 is expressed lung stem cells. By analyzing

the wound healing progression and lineage tracing of basal cell activity during gingival wound healing, our

preliminary data suggests that re-epithelialization is negatively affected during gingival wound healing in adult

Irx1+/- (Het) mice, as indicated by delayed wound closure, delayed structural changes in regenerated

epithelium and altered differentiation of keratinocytes. The transcriptomic analysis revealed a wound

associated gene signature in the Irx1+/- epithelium. In preliminary studies, Irx1 was identified as a new gene

that is primed at the base of the gingiva, which may facilitate rapid and scarless wound healing through the

EGF signaling pathway.

To determine if Irx1 regulates a progenitor cell niche in the oral cavity we propose three specific aims.

1) Determine the expression pattern of Irx1 during embryogenesis and homeostasis in potential progenitor cell

niches in the oral cavity; 2) Identify the role of Irx1 in oral tissues using inducible Cre models for lineage

tracing; 3) To analyze the effects of oral wound healing regulated by Irx1.

Grant Number: 1R56DE033716-01A1
NIH Institute/Center: NIH

Principal Investigator: BRAD AMENDT

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