grant

Investigation of Molybdenum Cofactor through Chemical, Biochemical and Biophysical Studies

Organization INDIANA UNIVERSITY INDIANAPOLISLocation INDIANAPOLIS, UNITED STATESPosted 1 Sept 2020Deadline 31 Mar 2027
NIHUS FederalResearch GrantFY2024Aldehyde oxidaseAlimentary CanalAmino AcidsAnabolismBiochemicalCessation of lifeChemicalsChemistryChildhoodClassificationCoenzymesCombined molybdoflavoprotein enzyme deficiencyComplexCryo-electron MicroscopyCryoelectron MicroscopyCrystallographiesCrystallographyCysteineDMSODMSO reductaseDeathDemasorbDemesoDigestive TractDimethyl SulfoxideDimethylsulphinylDimethylsulphoxideDiseaseDisorderDistressDmsABC enzymeDomosoDromisolEPR spectroscopyESR SpectroscopyElectrochemistryElectron CryomicroscopyElectron Paramagnetic ResonanceElectron Spin ResonanceElectron Spin Resonance SpectroscopyElectron TransportElectronicsElectronsEnvironmentEnzyme CofactorsEnzyme GeneEnzymesFailureFamilyGI TractGastrointestinal TractGastrointestinal tract structureH-bondHalf-CystineHealthHumanHydrogen BondingHypoxanthine DehydrogenaseHypoxanthine OxidaseHypoxanthine-Xanthine OxidaseInvestigationKineticsKnowledgeL-CysteineL-SerineLifeLigandsMass Photometry/Spectrum AnalysisMass SpectrometryMass SpectroscopyMass SpectrumMass Spectrum AnalysesMass Spectrum AnalysisMetalsModelingModern ManMolecularMolybdenum Cofactor DeficiencyMolybdoenzyme molybdenum cofactorMonitorMutateN,N-dimethylmethanamine N-oxideNMR SpectrometerNMR SpectroscopyNO3-Negative Beta ParticleNegatronsNitrate ReductasesNitratesOxidantsOxidation-ReductionOxidizing AgentsParamagnetic ResonancePeriplasmic SpacePhosphorylationPhysiologicPhysiologicalProcessPropertyProtein PhosphorylationProteinsPterinsPurine-Xanthine OxidasePyransReactionRedoxResearchResearch ResourcesResourcesSerineSingle Crystal DiffractionSpectroscopySpectrum AnalysesSpectrum AnalysisStructureSystematicsTMAOTechniquesTestingVariantVariationWorkX Ray CrystallographiesX-Ray CrystallographyX-Ray Diffraction CrystallographyX-Ray/Neutron CrystallographyXanthine OxidaseXray Crystallographyalimentary tractaminoacidautosomebiophysical analysisbiophysical studiesbiosynthesischemical synthesiscoenzyme analogcofactorcryo-EMcryoEMcryogenic electron microscopydensitydigestive canaldimethyl sulfoxide reductasedimethylsulfoxide reductaseelectron acceptorelectron donorelectron paramagnetic resonance spectroscopyelectron transferelectronicelectronic deviceelectronic structuregeometric structuremembermicroorganismmolybdenum cofactormolybdopterinmolybdopterin cofactornitratenuclear magnetic resonance spectroscopyoxidationoxidation reduction reactionpediatricperiplasmprototypepterin molybdenum cofactorpyranopterinquinol-nitrate oxidoreductaserespiratoryrespiratory nitrate reductasespectroscopic studyspectroscopic surveystructural geometrysuccesssulfite oxidasetheoriestrimethylamine N-oxidetrimethylamine oxidetrimethylammonium oxidetrimethyloxamine
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Full Description

The molybdenum cofactor (Moco) is an essential biomolecule for all forms of life. Numerous
enzymes rely on the proper functioning of Moco for normal physiological functions. Failures to

biosynthesize Moco cause severe physiological distress and even childhood death. Outside the

protein environment, this cofactor is unstable and has not yet been chemically synthesized. The

Moco has several redox active components, and together, these components can carry out up to

ten-electron chemistry, while in most cases, the substrate transformation requires only two

electrons. To understand how different components stabilize the electronic structure that supports

reactivity, we will investigate discrete molecules with defined features. The work outlined in this

proposal seeks to complete the synthesis of the closest chemical mimic of Moco. While in the

reduced state, Moco is unstable outside the protein environment, and how it is stabilized within a

protein is not clear. The proposal also seeks to understand the geometric and electronic

properties of Moco in the DMSO reductase family of enzymes using periplasmic nitrate reductase

(NapA) and its variants as a model through biochemical and biophysical studies. The specific

aims of the proposal are: 1) to synthesize pterin Mo-centers and Mo=X (X=S, O) complexes

allowing investigation of their geometric and electronic structures in relation to reactivity; 2) to

understand the geometric, electronic, and functional properties of the Mo-center in the DMSOR

family using NapA as a model. Overall, new important molecular-level knowledge will be

generated about the structure-function of a class of enzymes important to human health.

Grant Number: 2R15GM139064-02
NIH Institute/Center: NIH

Principal Investigator: PARTHA BASU

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