grant

Genetic and developmental mechanisms that underlie craniofacial (co)variation

Organization UNIVERSITY OF MASSACHUSETTS AMHERSTLocation HADLEY, UNITED STATESPosted 1 Jan 2017Deadline 30 Nov 2027
NIHUS FederalResearch GrantFY202621+ years old3-D3-D modeling3-Dimensional3D3D modelingATAC sequencingATAC-seqATACseqAddressAdultAdult HumanAffectAnimalsAreaAssay for Transposase-Accessible Chromatin using sequencingAutoregulationAwardBiologic ModelsBiologicalBiological ModelsBiologyBionomicsBody TissuesBone TissueBrainBrain Nervous SystemCRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCandidate Disease GeneCandidate GeneCas nuclease technologyCell BodyCell Communication and SignalingCell SignalingCellsCellular MechanotransductionChromosome MappingCichlid FishCichlidaeCichlidsClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyComplexDataData SetDevelopmentDevelopmental ProcessDiseaseDisorderDisparateEcologyEmbryoEmbryonicEncephalonEnvironmentEnvironmental FactorEnvironmental Risk FactorEquilibriumEvolutionExperimental ModelsEyeEyeballFaceFeedbackGWA studyGWASGene ExpressionGene LocalizationGene MappingGene Mapping GeneticsGeneralized GrowthGenesGeneticGenomeGenomicsGenotypeGeometryGoalsGrowthHandHeadHealthHeartHomeostasisHumanIntracellular Communication and SignalingInvestigationIodineJawKineticsLinkage MappingMalawiMapsMechanical Signal TransductionMechanicsMechanosensory TransductionModel SystemModelingModern ManModernizationModificationMorphologyMuscleMuscle TissueNatureNyasalandOrganOutcomePatternPedigreePhenotypePhysiological HomeostasisProceduresProcessProgenitor CellsQTLQuantitative Trait LociRNA SeqRNA sequencingRNAseqRegulationResearchScanningSeriesShapesSignal PathwaySignal TransductionSignal Transduction SystemsSignalingSkeletonSkullSpecific qualifier valueSpecifiedStaining methodStainsSystemTimeTissue GrowthTissuesTotal Human and Non-Human Gene MappingVariantVariationWorkadulthoodassay for transposase accessible chromatin followed by sequencingassay for transposase accessible chromatin seqassay for transposase accessible chromatin sequencingassay for transposase-accessible chromatin with sequencingbalancebalance functionbiologicbiological signal transductionbonecandidate identificationcomparative genomicscraniofacialcraniofacial bonecraniofacial complexcraniofacial developmentcraniofaciescraniumdevelopmentalenvironmental riskfacesfacialgenetic mappinggenetic pedigreegenome wide associationgenome wide association scangenome wide association studygenomewide association scangenomewide association studygenomic datagenomic datasethandsinsightkinematic modelkinematicsmechanicmechanicalmechanical forcemechanical loadmechanosensingmechanotransductionmultiple data setsmultiple datasetsmuscularontogenypedigree structurepleiotropic effectpleiotropismpleiotropyshape analysisshape descriptionskeletalskeletonssoft tissuestem cellsthree dimensionalthree-dimensional modelingtooltraittranscriptome sequencingtranscriptomic sequencingwhole genome association analysiswhole genome association study
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Full Description

Abstract/Summary:
The vertebrate craniofacial skeleton is a dynamic organ that arises and is maintained through an

intricate balance of genetic and environmental inputs. Disruptions to either can lead to deleterious

health outcomes. While significant progress has been made toward understanding the genetic and

cellular mechanisms that underlie early craniofacial patterning, much less is known about the basis for

craniofacial variation that manifests over extended periods of development, and depends upon the

environmental context in which it occurs. Whether it's the physical interactions between cells and

tissues within the developing embryo, or the mechanic forces imposed on the system, these contexts

will determine how genetically-encoded systems unfold over time to determine craniofacial geometry.

Implicit to these ideas is feedback in the system. Feedback is how disparate developmental units

come together to form integrated functional systems - e.g., reciprocal signaling between adjacent but

developmentally distinct tissues. It is also necessary for normal growth and homeostasis in kinetic

systems - e.g., progenitor cells must sense environmental inputs, including mechanical load, and adjust

developmental processes accordingly. Broadly speaking this proposal seeks to understand how both

types of feedback are regulated at the genetic level. In doing so, three specific questions will be

addressed: (1) What are the genes that contribute to craniofacial shape? (2) Do they exert their effects

on more than one tissue, either via pleiotropy or as part of the same signaling pathway? (3) How do

these loci interact with the environment, via mechanosensing, to affect variation in facial form?

Cichlid fishes will be used as the experimental model, as they have undergone extensive

evolutionary modifications of their skulls and jaws in a very brief period of time, making them ideal for

genetic/genomic mapping. Cichlids are also well known for their capacity to remodel their jaws under

different foraging environment, but not all cichlids share this ability, and thus plasticity itself is

genetically determined and has diverged in this system. Cichlids therefore represent an ideal model to

identify and parse the genetic, environmental, and GxE effects that underlie craniofacial variability. This

proposal leverages these experimental attributes, and integrates advanced phenotypic, genotypic and

functional tools to provide a more holistic understanding of the mechanisms that underlie craniofacial

shape.

Grant Number: 5R01DE026446-09
NIH Institute/Center: NIH

Principal Investigator: Craig Albertson

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