grant

Gene regulatory mechanisms governed by the ASXL1/HCF1/OGT complex during neurogenesis

Organization ST. JUDE CHILDREN'S RESEARCH HOSPITALLocation MEMPHIS, UNITED STATESPosted 1 Jul 2022Deadline 30 Jun 2027
NIHUS FederalResearch GrantFY20251-Phosphatidylinositol 3-Kinase21+ years oldAKTAKT inhibitionAchievementAchievement AttainmentAdultAdult HumanAkt proteinAllelesAllelomorphsAnimalsAwardBasal Transcription FactorBasal transcription factor genesBehaviorBehavioralBindingBrachydanio rerioBrainBrain DiseasesBrain DisordersBrain Nervous SystemCell Communication and SignalingCell CountCell DifferentiationCell Differentiation processCell Growth in NumberCell IsolationCell MultiplicationCell NumberCell ProliferationCell SegregationCell SeparationCell Separation TechnologyCell SignalingCellular ProliferationChIP assayCobalaminComplexDNA Molecular BiologyDNA mutationDanio rerioDataDensitometryDevelopmentDiseaseDisorderEncephalonEncephalon DiseasesEpilepsyEpileptic SeizuresEpilepticsFK506 Binding Protein 12-Rapamycin Associated Protein 1FKBP12 Rapamycin Complex Associated Protein 1FRAP1FRAP1 geneFRAP2FellowshipFishesFlow CytofluorometriesFlow CytofluorometryFlow CytometryFlow MicrofluorimetryFlow MicrofluorometryFluorescence Activated Cell Sorting FractionationFluorescence-Activated Cell SortingFluorescence-Activated Cell SortingsFutureGene AlterationGene ExpressionGene MutationGene TranscriptionGeneral Transcription Factor GeneGeneral Transcription FactorsGenesGenetic ChangeGenetic TranscriptionGenetic defectGenetic mutationGerm LinesGliaGlial CellsGoalsHCF proteinHCF-1HCFC1Hereditary DiseaseHeterozygoteHumanImageImmunoblottingImpairmentIn VitroInborn Genetic DiseasesInherited disorderIntellectual disabilityIntellectual functioning disabilityIntellectual limitationIntermediary MetabolismIntracellular Communication and SignalingIntracranial CNS DisordersIntracranial Central Nervous System DisordersIntractable EpilepsyKnowledgeKolliker's reticulumLabelLarvaLeptazoleLinkManuscriptsMechanistic Target of RapamycinMetabolic ProcessesMetabolismMiceMice MammalsModern ManMolecularMolecular BiologyMolecular InteractionMurineMusMutationNerve CellsNerve UnitNeural CellNeural Stem CellNeurocyteNeurodevelopmental DisorderNeurogliaNeuroglial CellsNeurologicNeurologicalNeurological Development DisorderNeuronsNeurosciencesNeurosphereNon-neuronal cellNonneuronal cellNonsense MutationOrthologOrthologous GenePI-3 KinasePI3-KinasePI3CGPI3KGammaPI3kPIK3PIK3CGPIK3CG genePathway interactionsPentamethylenetetrazolePentetrazolePentylenetetrazolPentylenetetrazolePhasePhenotypePhosphatidylinositol 3-KinasePhosphatidylinositol-3-OH KinasePhosphoinositide 3-HydroxykinasePhosphorylationPostdocPostdoctoral FellowPredispositionPreparationProgenitor CellsProliferatingProtein Kinase BProtein PhosphorylationProteinsProteomicsProto-Oncogene Proteins c-aktPtdIns 3-KinaseRAC-PK proteinRAFT1RNA ExpressionRapamuneRapamycinRefractory epilepsyReporter GenesResearchResearch AssociateRoleS PeriodS phaseScienceSeizure DisorderSeizuresSignal TransductionSignal Transduction SystemsSignalingSignaling MoleculeSirolimusSortingSusceptibilitySyndromeSynthesis PeriodSynthesis PhaseTechniquesTestingTimeTrainingTraining ProgramsTranscriptionTranscription Factor Proto-OncogeneTranscription factor genesTransgenic OrganismsType I Phosphatidylinositol KinaseType III Phosphoinositide 3-KinaseVCAF factorWestern BlottingWestern ImmunoblottingZebra DanioZebra FishZebrafishadulthoodbiological signal transductionbrain abnormalitiesc-akt proteincell proliferation factor HCFcell sortingcell typecellular differentiationchromatin immunoprecipitationcofactorcongenital anomalycritical perioddevelopmentaldrug-resistant epilepsyepilepsiaepileptogenicflow cytophotometrygene defectgenome mutationhereditary disorderheritable disorderheterozygosityhost cell factor C1imagingin vivoinborn errorinherited diseasesinherited genetic diseaseinherited genetic disorderinhibitorintellectual and developmental disabilityknock-downknockdownlimited intellectual functioningloss of function mutationmTORmTOR InhibitormTOR inhibitionmammalian target of rapamycinmotor diseasemotor disordermotor dysfunctionmouse modelmurine modelmutantmutant allelenerve cementnerve stem cellneural precursorneural precursor cellneural progenitorneural progenitor cellsneural stem and progenitor cellsneurodevelopmental diseaseneurogenesisneurogenic progenitorsneurogenic stem cellneuron developmentneuron progenitorsneuronalneuronal developmentneuronal progenitorneuronal progenitor cellsneuronal stem cellsneuroprogenitornon-sense mutationnovelpathwaypost-docpost-doctoralpost-doctoral traineepreparationspreventpreventingprofessorprogenitor and neural stem cellspromoterpromotorprotein blottingproto-oncogene protein RACproto-oncogene protein aktrac protein kinaserelated to A and C-proteinresearch associatesscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingskillssocial rolestem cellstherapeutic targettranscription factortranscriptomicstransgenicupstream kinase
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Full Description

Project Summary
Mutation of HCFC1 causes a multiple congenital anomaly syndrome characterized by inborn errors of cobalamin

metabolism, intractable epilepsy, intellectual disability, and motor dysfunction. Despite an implication for HCFC1

in these neurological impairments, a mechanism describing the function of HCFC1 during brain development

has not been completely elucidated. HCFC1 encodes for a transcriptional co-factor protein known to regulate

cellular proliferation of various progenitor cells including neural precursor cells (NPC). NPCs undergo rapid

expansion during early brain development and differentiate into all the major cell types in the brain (i.e. neurons,

glia). To begin to elucidate a putative mechanism for HCFC1 in NPC expansion, we created the Co60 allele

which introduces a loss of function mutation in the zebrafish hcfc1a ortholog. Through immunohistochemical

labeling and cell counts, we demonstrated that heterozygous carriers of the Co60 allele (Co60/+) had increased

proliferation of NPCs. We next used transcriptomics of Co60/+ whole brain homogenates to reveal a 14-fold

increase in the expression of asxl1, a transcription factor critical for cell proliferation and activation of AKT

signaling. We found that inhibition of PI3K, an upstream activator of AKT, in Co60/+ mutants restored asxl1

dependent NPC over proliferation. Moreover, preliminary western blotting and densitometry analysis of our

mutants confirm hyperphosphorylation of AKT (Thr308). We next used chromatin immunoprecipitation to confirm

a direct binding of human HCFC1 to the zebrafish asxl1 promoter. Together, these findings indirectly link for the

first time hcfc1a function and asxl1 expression with AKT activation and NPC proliferation. What remains to be

understood is the level of AKT signaling in isolated NPCs derived from hcfc1a mutants and which AKT

downstream signaling molecules, like mTOR, regulate proliferation. Completion of this study will help to identify

novel molecular pathways that regulate brain development downstream of HCFC1 and pinpoint mechanisms as

to how its dysregulation contributes to neurodevelopmental disorders. During the F99 phase of this award, I seek

to gain working knowledge of techniques in molecular biology that include protein isolation, western

immunoblotting, fluorescence activated cell sorting (FACS), flow cytometry, advanced imaging, and behavioral

neuroscience. Additionally, I aim to refine my skills and obtain professional development in grantsmanship,

manuscript review and preparation, build and maintain my science network, and finalize my dissertation

research.

Grant Number: 5K00NS125690-04
NIH Institute/Center: NIH

Principal Investigator: Victoria Castro

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