grant

From RRID to Resource Watch: A Knowledgebase of Biomedical Research Resources

Organization UNIVERSITY OF CALIFORNIA, SAN DIEGOLocation LA JOLLA, UNITED STATESPosted 15 Jul 2022Deadline 30 Apr 2027
NIHUS FederalResearch GrantFY2025AntibodiesBiomedical ResearchCell LineCellLineCollaborationsCommunicationCommunitiesComputer softwareCore FacilityDataData BasesDatabasesDecision MakingEnsureFundingGeneralized GrowthGoalsGrowthHarvestIndividualInformation NetworksInfrastructureInvestigatorsJournalsKnowledgeLiteratureMagazineMeasurableNIDDKNational Institute of Diabetes and Digestive and Kidney DiseasesNational Institutes of HealthNeurosciencesNon-Profit OrganizationsNonprofit OrganizationsOrganismPaperPlasmidsProcessReagentRegistriesReproducibilityResearchResearch PersonnelResearch Project SummariesResearch ResourcesResearchersResourcesRoleScienceScientistSoftwareSourceSpecific qualifier valueSpecificitySpecifiedStrains Cell LinesStructureTimeTissue GrowthUnited States National Institutes of HealthUniversitiesValidationWritingbasebasesbiomedical scientistcentral databasecultured cell linedata basedigitaldiscovery miningimprovedindexinginformation frameworkinformation gatheringinternet portalknowledge baseknowledge curationknowledge integrationknowledgebaseliterature miningliterature searchingliving systemmodel organisms databaseson-line portalonline portalontogenyoutreachsocial roletext miningtext searchingtoolvalidationsweb portalweb-based portal
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Full Description

Project Summary
Research Resource Identifiers, RRIDs, are persistent identifiers for key research resources such as antibodies,

cell lines, organisms and digital assets. They are in use in over 1300 biomedical journals and are supplied by

authors to uniquely identify which resources are used within a study. The RRID project was launched as a grass-

roots effort in 2014 to improve the identifiability of research resources in the biomedical literature. RRIDs depend

on the collaboration of journals with comprehensive registries and stock centers, which provide an authoritative

identifier for each resource type. The introduction of RRIDs has had a significant impact on our ability to identify

and track the use of research resources in the biomedical literature. Papers that use RRIDs have improved

identifiability of resources from <50% to >90%. RRIDs make it easier to track usage, assign credit, and aggregate

information about how resources perform in the literature. Towards that end, we have assembled a curated

knowledge base that provides information on RRID use in the literature. Because RRIDs are served from a

central database which is used broadly by scientists as they write their papers, the portal can also serve as a

central hub for disseminating critical information about how such reagents perform. For example, the RRID portal

provides warnings on contaminated cell lines provided by Cellosaurus. However, such information on other types

of resources is much more dispersed. Therefore, we built a related knowledge base, Resource Watch, that

enhances the information about RRIDs. The RRID project has been bootstrapped on top of existing NIH-funded

projects, but given its growth and importance to biomedicine, we seek to unify the current RRID project into a

self-supporting entity.

Grant Number: 5R24GM144308-04
NIH Institute/Center: NIH

Principal Investigator: Anita Bandrowski

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