grant

EXAMINING THE ROLE OF BMAL1, A NOVEL MATERNAL FACTOR IN PREIMPLANTATION DEVELOPMENT

Organization UNIVERSITY OF CALIFORNIA, SAN DIEGOLocation LA JOLLA, UNITED STATESPosted 1 Aug 2023Deadline 31 Jul 2026
NIHUS FederalResearch GrantFY2024ARNTLARNTL geneAddressAffectAnimalsAreaBMAL1Bio-InformaticsBioinformaticsBlastosphereCannot achieve a pregnancyCell BodyCellsCouplesCryingCytoplasmDNA AlterationDNA Sequence AlterationDNA mutationDataDefectDepositDepositionDeveloping fetusDevelopmentDifficulty conceivingEarly Gene TranscriptionsEmbryoEmbryo DevelopmentEmbryogenesisEmbryologyEmbryonicEmbryonic DevelopmentExhibitsFailureFeedbackFemaleFertilizationFetal DevelopmentFoundationsFutureGene TranscriptionGenesGenetic TranscriptionGenetic mutationGenomeGestationGoalsGrantHumanHypothalamic structureHypothalamusImmunofluorescenceImmunofluorescence ImmunologicImplantIn Situ HybridizationInfertilityInvestigationKnock-outKnockoutLive BirthMaternal Messenger RNAMaternal mRNAMentorsMessenger RNAMethodsMiceMice MammalsModelingModern ManMonitorMorphologyMovementMurineMusNICHDNational Institute of Child Health and Human DevelopmentNational Institute of Children's Health and Human DevelopmentNon-Polyadenylated RNAOocytesOogenesisOvaryOvocytesPhasePhenotypePre-implantation Embryo DevelopmentPre-implantation developmentPregnancyPreimplantation EmbryoPreimplantation Embryo DevelopmentPreimplantation developmentProteinsRIP seqRIPseqRNARNA ExpressionRNA Gene ProductsRNA immunoprecipitation and sequencingRNA immunoprecipitation sequencingRNA-Binding ProteinsRegulationRegulatory PathwayReporterResearchRibo-seqRibonucleic AcidRoleSequence AlterationStrategic PlanningSystemTechniquesTestingTimeTrainingTranscriptionTranslatingTranslational RegulationTranslationsVenusWild Type MouseWorkWritingaryl hydrocarbon receptor nuclear translocator-likeblastocystblastulabody movementcircadiancircadian biologycircadian regulationdevelopmentalegg qualityembryo cultureepitranscriptomicsexperimentexperimental researchexperimental studyexperimentsfertility cessationfertility lossfertilizationsfield based datafield learningfield studyfield testgene networkgenomic alterationglobal gene expressionglobal transcription profilehypothalamicidiopathic infertilityin situ Hybridization Geneticsin situ Hybridization Staining Methodinfertileinsightknock-downknockdownlive cell imagelive cell imaginglive cellular imagelive cellular imagingmRNAmRNA DegradationmRNA Transcript Degradationmolecular clockmultiomicsmultiple omicsnoveloffspringoocyte qualitypanomicspre-implantationpre-implantation embryopreimplantationprogramsribosome footprint profilingribosome profilingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingskillssocial roletranscriptometranslationunexplained infertilitywildtype mouse
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Full Description

PROJECT SUMMARY
Unexplained infertility accounts for 25% of infertility cases. One of the challenges in identifying factors related to

infertility, particularly unexplained infertility is that there are no live births. A hallmark of genes essential in

oogenesis and during preimplantation development is a failure to progress to the point a viable pregnancy can

be recognized. As such, identifying genes essential to the these crucial stages is an important step in

understating unexplained infertility. Prior research suggests that Bmal1-/- mice produce embryos which are largely

lost before the blastocyst stage, even when implanted into pseudopregnant wildtype mice. Dr. Cassin’s

preliminary data suggests that initial deficits occur much earlier as Bmal1-/- oocytes are largely observed to be

abnormal, likely leading to the phenotype previously described. Further, preliminary work in this grant reveals

that BMAL1 is expressed in developing follicles and throughout preimplantation development. BMAL1 has been

shown to regulate many of the most essential regulatory functions in early development such as cap-dependent

translation, and mRNA regulation, but the role of Bmal1 has not yet been investigated. This grant proposes the

examination of Bmal1 during oogenesis and the maternal to zygotic transition (MZT). The overarching hypothesis

of this grant is Bmal1 is an essential maternal factor during oogenesis, aids in the regulation of many essential

early genes transcribed by the embryo, and regulates a cell-autonomous embryonic clock. Aim1 will address the

expression and phenotype of Bmal1 activity during oogenesis. The guiding hypothesis for Aim1 is a primary

deficit in oogenesis as a result of Bmal1 m-KO contributes to poor oocyte quality and defects in MZT progression.

This Aim will be addressed through the use of embryo culture and immunohistochemical (IHC) techniques. The

guiding hypothesis for Aim2 is BMAL1 is an essential factor for preimplantation through the regulation of both

maternal mRNAs as well as early embryonic genome activation. As BMAL1 has many regulatory functions Aim2

combine rescue experiments with several -omics techniques to investigate the specific function that BMAL1 has

in the MZT. Aim3 examines the regulation of the MZT by Bmal1. The guiding hypothesis of Aim3 is the cell-

autonomous clock of the developing embryo is regulated through Bmal1. To address Aim3 live cell imaging of

reporter mice will be used to observe movement of BMAL1 throughout the cell. This work specifically focuses on

one gene, Bmal1. However, because Bmal1 is a gene involved in many regulatory pathways, this grant opens

up a new area of research, the circadian genes in early development. Further, it identifies a novel potential factor

in unexplained infertility, and identifies a new direction in the field of infertility. Dr. Cassin will be trained by her

mentors in the fields of embryology and circadian biology. Together with training in presenting, scientific writing,

and bioinformatics, Dr. Cassin will possess all the skills necessary to establish a successful, independent lab

following the mentored phase of the grant.

Grant Number: 5K99HD107217-02
NIH Institute/Center: NIH

Principal Investigator: Jessica Cassin

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