grant

Discovering the Essential Genome of Plasmodium Falciparum

Organization UNIVERSITY OF SOUTH FLORIDALocation TAMPA, UNITED STATESPosted 15 Jun 2018Deadline 30 Jun 2026
NIHUS FederalResearch GrantFY20240-11 years oldActive Follow-upAfrica South of the SaharaAnophelesAnopheles GenusAnophelinesBiologyBloodBlood CellsBlood Reticuloendothelial SystemCell BodyCellsChildChild YouthChildren (0-21)ClinicalCollectionComplexCoupledCryofixationCryopreservationCulicidaeDataDevelopmentDifferential Gene ExpressionEventFatty AcidsFemaleGene ExpressionGene ModifiedGene TranscriptionGeneralized GrowthGenesGeneticGenetic ScreeningGenetic TranscriptionGenetics-MutagenesisGenomeGenomic approachGenomicsGenotypeGrowthHarvestHeat ShockHeat-Shock ReactionHeat-Shock ResponseHumanInfectionIngestionLibrariesLinkMagnetismMalariaMapsModern ManMorbidityMorbidity - disease rateMosquitoesMutagenesisMutagenesis Molecular BiologyP falciparumP. falciparumP.falciparumPaludismPatternPeripheral Blood CellPersonsPhasePhenotypePlasmodiumPlasmodium InfectionsPlasmodium falciparumPlasmodium genomePopulationPost-Transcriptional ControlPost-Transcriptional RegulationPregnant WomenProcessProteinsProtocolProtocols documentationRNA ExpressionRNA SplicingRNA metabolismRegulationResolutionRoleSalivary GlandsSalivary Glands Head and NeckSiteSplicingSporozoitesSub-Saharan AfricaSubsaharan AfricaTimeTissue GrowthTissue-Specific Differential Gene ExpressionTissue-Specific Gene ExpressionTranscriptionValidationactive followupasexualbio-informatics toolbioinformatics toolcold preservationcold storagedevelopmentalexpectant motherexpecting motherexperiencefollow upfollow-upfollowed upfollowupfunctional genomicsgene interactiongene modificationgene networkgenetic approachgenetic strategygenetically modifiedgenome scalegenome-widegenomewidegenomic effortgenomic strategygraph theoryimprovedingestinterestkidsmachine learning based methodmachine learning methodmachine learning methodologiesmagneticmalemortalitymutantontogenypost-transcriptional gene regulationposttranscriptionalposttranscriptional controlposttranscriptional regulationpregnant mothersresolutionsscRNA-seqsexsex determinationsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial roletoolvalidationsyoungster
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Full Description

Project Summary/Abstract
Plasmodium falciparum is the major global cause of malaria morbidity and mortality and is especially

devastating in pregnant women and children in sub–Saharan Africa. Anopheline mosquitoes are essential for

the spread of new infections, requiring ingestion of mature sexual stages from an infected person and then a

second blood meal once infectious sporozoites are in the mosquito salivary glands. Development of sexual

stages in an infected person’s blood cells requires a complex ~14-day development phase. Even with a lot of

recent progress, many processes essential for sexual stage development remain poorly understood. Our group

has developed a functional genomics approach using random piggyBac mutagenesis, which can be applied at

genome scale to identify the P. falciparum genes essential for gametocyte development. We used this

approach to complete the first saturation mutagenesis screen of P. falciparum to functionally annotate genes

essential and dispensable for asexual blood-stage development. We estimate many genes in the

cryopreserved saturation mutagenesis library are likely to be sexual-stage genes and this mutant library can be

used for a forward phenotypic screen to identify most genes needed for sexual stage development. Advanced

‘omics analyses of selected mutants will be used to validate phenotypes and elucidate the broader cellular

events that underlie the phenotypes during sexual stage development in infected human blood cells. The

project combines expertise in gametocyte biology, advanced computational genomics, and phenotype

comparisons with clinical isolates.

Grant Number: 2R56AI130171-05A1
NIH Institute/Center: NIH

Principal Investigator: John Adams

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