grant

Developmental and molecular basis for a craniofacial metabolic syndrome

Organization UNIVERSITY OF CALIFORNIA, SAN FRANCISCOLocation SAN FRANCISCO, UNITED STATESPosted 3 Feb 2025Deadline 31 Jan 2027
NIHUS FederalResearch GrantFY20253-Pyridinecarboxylic AcidAblationAffectAllelesAllelomorphsAnabolismAssayBilateralBioassayBiological AssayBody TissuesCRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCardiovascularCardiovascular Body SystemCardiovascular Organ SystemCardiovascular systemCas nuclease technologyCausalityCharacteristicsClinicalClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyCraniofacial AbnormalitiesD-GlucoseDNA mutationDataDehydratasesDehydrogenasesDeveloped CountriesDevelopmentDevelopmental ProcessDextroseDietDihydronicotinamide Adenine DinucleotideDiphosphopyridine NucleotideDiseaseDisorderDrug TherapyElectroporationEmbryoEmbryonicEnzyme GeneEnzymesEtiologyExhibitsExtremitiesFingersFoundationsGene ExpressionGene variantGene x Environment InteractionGenesGeneticGenetic ChangeGenetic defectGenetic mutationGlucoseGlycosaminoglycansGoalsGxE interactionHeart VascularHumanHuman GenomeHydrasesHydro-LyasesHydrogenaseHydrogenlyaseIndustrialized CountriesIndustrialized NationsInfant MortalityInfant Mortality TotalInferior Maxillary BoneIntermediary MetabolismKnowledgeKynureninaseKynurenineLeadLimb structureLimbsMandibleMetabolicMetabolic PathwayMetabolic ProcessesMetabolic syndromeMetabolismMiceMice MammalsMicrognathismMissense MutationModelingModern ManMolecularMolecular DiseaseMucopolysaccharidesMurineMusMutant Strains MiceMutationNadideNeural CrestNiacinNicotinamide adenine dinucleotideNicotinamide-Adenine DinucleotideNicotinic AcidsNon-TrunkNucleotide Sugars MetabolismNucleotide Sugars Metabolism PathwayOutcomeOxidoreductaseOxidoreductase GenePathway interactionsPatientsPb elementPerinatalPeripartumPhalanxPharmacological TreatmentPharmacotherapyPhenotypePierre Robin SyndromePierre Robin sequencePoint MutationPreventative strategyPrevention strategyPreventive strategyProtein FamilyReductasesRegulationReportingRoleSecondary PalateSequence HomologySeriesSkeletal DevelopmentSpecificitySupplementationSyndromeTestingTherapeuticTissuesTongueVariantVariationallelic variantbiosynthesiscausationcell typecirculatory systemcongenital anomalycraniofacialcraniofacial anomaliescraniofacial complexcraniofacial defectscraniofacial developmentcraniofacial malformationcraniofaciesdeath among infantsdeath in first year of lifedeath in infancydeath in infantsdeveloped countrydeveloped nationdeveloped nationsdevelopmentaldietarydietsdisease causationdisease phenotypedosagedrug interventiondrug treatmentelectroporative deliveryenvironment effect on genegene editing methodgene editing methodologygene editing strategygene editing techniquesgene electrotransfergene environment interactiongene functiongene-editing approachgenetic variantgenome mutationgenomic variantheavy metal Pbheavy metal leadhigh riskhuman whole genomeimprovedin vivoindexinginfant deathinfant demiseinfant morbidityinfantile deathinsightkynurenine hydrolaseloss of functionmalformationmandibularmembermetabolism measurementmetabolomicsmetabonomicsmicrognathiamissense single nucleotide polymorphismmissense single nucleotide variantmissense variantmortality in infantsmouse geneticsmouse modelmouse mutantmurine modelnext generationnovelpathwaypharmaceutical interventionpharmacological interventionpharmacological therapypharmacology interventionpharmacology treatmentpharmacotherapeuticsscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial rolespatial and temporalspatial temporalspatiotemporaltooltranscriptomics
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Full Description

Project Summary
While causal genetic variants have been identified for many craniofacial syndromes, the functions of these genes

in normal development and the mechanisms by which these variants lead to disease often remain unknown.

Catel-Manzke syndrome (CMS) is a condition in which patients exhibit Pierre Robin Sequence (PRS),

encompassing micrognathia and cleft secondary palate, together with limb and cardiovascular phenotypes and

is caused by mutations in the dTDP-D-Glucose 4,6-dehydratase (TGDS)-encoding gene. The developmental

and molecular functions of TGDS are unknown but our preliminary data indicate it may function in pathways

impacting glycosaminoglycan metabolism. We have used next-generation CRISPR/Cas9 gene-editing

approaches in mice to generate an allelic series that models CMS and enables the study of Tgds function in

vivo. We propose a series of mouse genetic and quantitative morphometric assays to pinpoint the affected

developmental processes, which we combine with unbiased transcriptomic, glycomic, and metabolomic

approaches to build a foundation for understanding CMS etiology and Tgds developmental function. Completion

of these studies will provide novel insights into the function of an unstudied gene, reveal the etiology of a

craniofacial syndrome, and contribute to our fundamental understanding of how metabolic pathways regulate

craniofacial development.

Grant Number: 1R21DE033889-01A1
NIH Institute/Center: NIH

Principal Investigator: Jeffrey Bush

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