grant

Defining The Role of Failed-Repair Proximal Tubule Cells in AdvancedRenal Disease in African Americans

Organization NORTHWESTERN UNIVERSITYLocation CHICAGO, UNITED STATESPosted 1 Sept 2023Deadline 31 Aug 2027
NIHUS FederalResearch GrantFY2025AblationAccelerationAcuteAcute Kidney FailureAcute Kidney InsufficiencyAcute Renal FailureAcute Renal InsufficiencyAddressAdoptedAfrican AmericanAfrican American groupAfrican American individualAfrican American peopleAfrican American populationAfrican AmericansAfrican ancestryAfrican descentAfro AmericanAfroamericanAgeAmericanAreaBiologyCell BodyCell Communication and SignalingCell DifferentiationCell Differentiation processCell LineCell SignalingCellLineCellsCellular biologyChronic Kidney FailureChronic Renal DiseaseChronic Renal FailureCommunitiesDataDedicationsDiabetes MellitusDiseaseDisease OutcomeDisorderDisparitiesDisparityDoctor of PhilosophyDown-RegulationESKDESRDEducationEducational aspectsEnd stage renal failureEnd-Stage Kidney DiseaseEnd-Stage Renal DiseaseEpithelial CellsEuropeanEventFacultyFibrosisFoundationsGenesGeneticGoalsHGKHNF4HNF4-AlphaHNF4AHNF4A geneHealthHematopoietic Progenitor Kinase/Germinal Center Kinase-Like KinaseHepatocyte Nuclear Factor 4-AlphaHepatocyte Nuclear Factor, 4HumanHypertensionIn VitroInflammationInflammatoryInflammatory ResponseInjuryInjury to KidneyInterferon Type IIntracellular Communication and SignalingKidneyKidney DiseasesKidney Replacement TherapyKidney TubulesKidney Urinary SystemKinasesKnowledgeL-SerineL-ThreonineLeadershipLoxP-flanked alleleMAP4K4MAP4K4 geneMediatorMentored Clinical Scientist Development Award (K08)Mentored Clinical Scientists Development AwardMiceMice MammalsMitogen-Activated Protein Kinase Kinase Kinase Kinase 4Modern ManMolecularMolecular FingerprintingMolecular ProfilingMurineMusNCK Interacting KinaseNIK geneNatural regenerationNephronsNephropathyPersonsPh.D.PhDPhasePhased Career DevelopmentPhenotypePhosphotransferase GenePhosphotransferasesPopulationPost-Transcriptional Gene SilencingPrevalenceProximal Kidney TubulesRNA InterferenceRNA SeqRNA SilencingRNA sequencingRNAiRNAseqRegenerationRenal DiseaseRenal Replacement TherapyRenal TissueRenal tubule structureReportingResearchRiskRisk FactorsRoleSequence-Specific Posttranscriptional Gene SilencingSerineSignal TransductionSignal Transduction SystemsSignalingSingle-Nucleus SequencingStrains Cell LinesTCF14TechnologyTherapeuticThreonineTissue HarvestingTranscription Factor 14, Hepatic Nuclear FactorTransphosphorylasesUniversitiesUriniferous TubeVascular Hypertensive DiseaseVascular Hypertensive DisorderWait TimeWorkacute kidney injuryagesbiological signal transductioncareercareer developmentcell biologycellular differentiationchronic kidney diseasecostcultured cell linedesigndesigningdiabetesdiabeticdisparity in healthepigenomeepigenomicsfloxedfloxed alleleglobal gene expressionglobal healthglobal transcription profilehealth disparityhigh blood pressurehyperpiesiahyperpiesishypertensivehypertensive diseasehypertensive disorderimprovedin vivo Modelinjuriesinjury and repairinnovateinnovationinnovativekidney disorderkidney injurykidney repairknock-out animalknockout animalmedical collegemedical schoolsmolecular profilemolecular signaturemouse modelmultiomicsmultiple omicsmurine modelnew drug treatmentsnew drugsnew pharmacological therapeuticnew therapeutic approachnew therapeutic interventionnew therapeutic strategiesnew therapeuticsnew therapynew therapy approachesnew treatment approachnew treatment strategynext generation therapeuticsnovelnovel drug treatmentsnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel therapeutic approachnovel therapeutic interventionnovel therapeutic strategiesnovel therapeuticsnovel therapynovel therapy approachorganic acidpanomicsregeneraterenalrenal disorderrenal injuryrenal proximal tubulerenal tubulerepairrepairedresponsesNuc-SeqscRNA sequencingscRNA-seqschool of medicinesingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle nucleus RNA-sequencingsingle nucleus seqsingle-cell RNA sequencingsingle-nucleus RNA-seqsnRNA sequencingsnRNA-seqsocial roletargeted drug therapytargeted drug treatmentstargeted therapeutictargeted therapeutic agentstargeted therapytargeted treatmenttranscriptometranscriptome sequencingtranscriptomic sequencingtranscriptomics
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Full Description

Project Summary/Abstract - Shayna T. J. Bradford, Ph.D.
Americans of African descent are more than four times at risk for developing end-stage renal disease relative to Americans of European descent (2023 USRDS report). Acute kidney injury along with diabetes and hypertension are top risk factors for developing end-stage renal disease. Acute kidney injury can be initiated via diabetic and/or hypertensive events causing nephron injury, among other causes. New nephrons cannot regenerate after injury. Following acute kidney injury, epithelial cells lining proximal tubules of the nephron can repopulate damaged tubules to promote repair. However, a portion of cells fail to repair (termed failed-repair proximal tubule cells) and express proinflammatory and profibrotic markers. Failed-repair proximal tubule cells are hypothesized to cause local inflammation and fibrosis which can promote the acute kidney injury to chronic kidney disease transition, which leads to end-stage renal disease. Using single-nucleus RNA-seq, we identified a Traf2 and Nck interacting kinase (Tnik) to be specifically expressed in failed-repair proximal tubule cells after acute kidney injury in mice. In this MOSAIC R00 career development proposal, Dr. Shayna Bradford aims to define the role of Tnik in failed repair proximal tubule cells using a novel mouse model with Tnik ablation specifically in renal tubules. Additionally, she aims to use state-of-the-art single-cell multiomic technologies to define the role of failed- repair proximal tubule cells in the advanced acute kidney injury to chronic kidney disease transition in African Americans. Dr. Bradford’s career goal is to be at the forefront of unraveling the molecular mechanisms of renal health disparities in order to develop novel therapeutics to lessen serious gaps in renal health. In the R00 phase, she will continue gaining expertise in single-cell biology and computation, in vivo modeling of renal injury and regeneration, molecular mediators of health disparities, and in additional scientific and leadership areas. The R00 phase of this career development proposal will be carried out at Northwestern University Feinberg School of Medicine, a top 20 research oriented medical school with state-of-the art facilities and world class faculty dedicated to improving human health through education and discovery.

Grant Number: 5R00DK134882-03
NIH Institute/Center: NIH

Principal Investigator: Shayna Bradford

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