grant

Defining and exploiting the plasticity transcriptome to repair the damaged spinal cord

Organization YALE UNIVERSITYLocation NEW HAVEN, UNITED STATESPosted 15 Dec 2021Deadline 30 Nov 2026
NIHUS FederalResearch GrantFY202621+ years oldAcuteAdultAdult HumanAffectAnatomic SitesAnatomic structuresAnatomyAtlasesAutomobile DrivingAxonBody TissuesCNS Nervous SystemCell BodyCell Growth InhibitorsCellsCentral Nervous SystemCervical Portion of Spinal CordCervical Spinal CordCervical spinal cord structureChronicClinicalContralateralCorticospinal TractsCranial Nerve IIDataData SetDifferential Gene ExpressionDiseaseDisorderDissociationEmbryoEmbryonicEmotionalFamilyFoundationsGene Expression MonitoringGene Expression Pattern AnalysisGene Expression ProfilingGene TranscriptionGeneralized GrowthGenesGenetic TranscriptionGeometryGoalsGrowthGrowth InhibitorsHarvestIP3-5-phosphataseIn VitroInjuryInterventionInvestigatorsLabelLesionLocationLumbar Portion of Spinal CordLumbar Spinal CordLumbar spinal cord structureMediatingMedical RehabilitationMiceMice MammalsModelingMolecularMolecular TargetMurineMusMyelinNatural regenerationNerve CellsNerve UnitNeural CellNeuraxisNeurocyteNeuronsOptic NervePathway interactionsPatientsPhenotypePopulationProteinsRNA ExpressionRNA SeqRNA sequencingRNAseqReceptor ProteinRecoveryRecovery of FunctionRegenerationRehabilitationRehabilitation therapyResearchResearch PersonnelResearchersRetinal Ganglion CellsSecond Cranial NerveSpecificitySpinalSpinal Cord TraumaSpinal TraumaSpinal cord damageSpinal cord injuredSpinal cord injuryTherapeuticTherapeutic InterventionTissue GrowthTissue-Specific Differential Gene ExpressionTissue-Specific Gene ExpressionTissuesTitrationsTrainingTranscript Expression AnalysesTranscript Expression AnalysisTranscriptionTraumaTraumatic MyelopathyViralWild Type Mouseadulthoodanalyze gene expressionaxon growthaxonal growthdesigndesigningdrivingeffective therapyeffective treatmentexperiencefunctional plasticityfunctional recoveryfunctional restorationgene expression analysisgene expression assaygene signaturesgenetic signatureglobal gene expressionglobal transcription profilehiPSChuman iPShuman iPSChuman induced pluripotent cellhuman induced pluripotent stem cellshuman inducible pluripotent stem cellshuman inducible stem cellsin vivoinduced human pluripotent stem cellsinjuriesinjury burdeninositol 5-phosphataseinositol polyphosphate 5-phosphataseinositol triphosphataseinositol triphosphate 5-phosphataseinositol-1,4,5-trisphosphate 5-phosphataseintervention therapylipid phosphate phosphatasemyoinositol trisphosphataseneuronalnew drug treatmentsnew drugsnew pharmacological therapeuticnew therapeuticsnew therapynext generation therapeuticsnovelnovel drug treatmentsnovel drugsnovel pharmaco-therapeuticnovel pharmacological therapeuticnovel therapeuticsnovel therapyontogenypathwaypatient prognosispreventpreventingprogramsreceptorregeneraterehab therapyrehabilitativerehabilitative therapyrepairrepair strategyrepairedresponserestore functionrestore functionalityrestore lost functionretinal ganglionscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsynergismtranscriptional profilingtranscriptometranscriptome sequencingtranscriptomic sequencingwildtype mouse
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Full Description

SUMMARY
A century of research has shown that the adult central nervous system is incapable of self-repair after injury or

disease. Indeed, adults with traumatic spinal cord injuries maintain chronic functional deficits that impact all

aspects of their lives. However, increasing evidence suggests that the adult CNS retains some ability to initiate

a growth program and functionally re-organize in response to activity, experience and mild trauma and

particularly after intensive rehabilitative therapy. In this proposal we have used in vivo viral tracing in

combination with FACS and single cell RNA sequencing to develop a comprehensive anatomical and

molecular atlas of the adult corticospinal tract (CST). We plan to leverage this atlas to define the molecular

mechanisms that drive axon growth in specific subsets of corticospinal tract neurons during rehab in the

presence and absence of the axon growth inhibitors nogo receptor-1. We believe that a comprehensive

understanding of the intrinsic molecular mechanism that initiates and sustains rehab-mediated axon growth

within defined subsets of CST neurons can then be exploited to design novel therapies to repair the acutely

and chronically damaged spinal cord.

Grant Number: 5R01NS121026-05
NIH Institute/Center: NIH

Principal Investigator: William Cafferty

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