grant

Core B - Retrotransposon Genomics, Technology and Analysis Core

Organization BROWN UNIVERSITYLocation PROVIDENCE, UNITED STATESPosted 1 Sept 2016Deadline 31 Dec 2026
NIHUS FederalResearch GrantFY2026AD and related dementiaAD dementiaAD related dementiaADRDAffinity ChromatographyAgingAlzheimer Type DementiaAlzheimer disease dementiaAlzheimer sclerosisAlzheimer syndromeAlzheimer'sAlzheimer's DiseaseAlzheimer's Disease and its related dementiasAlzheimer's and related dementiasAlzheimer's dementia and related dementiaAlzheimer's dementia or related dementiaAlzheimer's disease and related dementiaAlzheimer's disease and related disordersAlzheimer's disease and related forms of dementiaAlzheimer's disease or a related dementiaAlzheimer's disease or a related disorderAlzheimer's disease or related dementiaAlzheimer's disease related dementiaAlzheimers DementiaAmentiaAnimal ModelAnimal Models and Related StudiesAnimalsAreaAssayBioassayBiologicalBiological AssayBiologyBody TissuesCell AgingCell BodyCell SenescenceCellsCellular AgingCellular SenescenceChIP SequencingChIP-seqChIPseqClinicalCollaborationsComplementary DNAComplexComputational toolkitComputer AnalysisComputing MethodologiesCytoplasmDNADataData SetDegenerative Neurologic DisordersDementiaDeoxyribonucleic AcidDetectionDrosophilaDrosophila genusElementsEngineeringEnvironmentEukaryotaEukaryoteEventGenesGenomicsGerm LinesGoalsGrantHybridsImaging technologyIndividualInterphase CellL1 ElementsLINE-1 ElementLife CycleLife Cycle StagesMapsMass Photometry/Spectrum AnalysisMass SpectrometryMass SpectroscopyMass SpectrumMass Spectrum AnalysesMass Spectrum AnalysisMeasurementMeasuresMethodsMiceMice MammalsModelingMonitorMurineMusNerve DegenerationNervous System Degenerative DiseasesNeural Degenerative DiseasesNeural degenerative DisordersNeurodegenerative DiseasesNeurodegenerative DisordersNeurologic Degenerative ConditionsNeuron DegenerationNon-dividing CellNondividing CellOrganismParticipantPrimary Senile Degenerative DementiaPropertyProteinsProteomicsRIP seqRIPseqRNA SeqRNA immunoprecipitation and sequencingRNA immunoprecipitation sequencingRNA sequencingRNAseqReplicative SenescenceReporterReportingResting CellRetrotranspositionRetrotransposonReverse TranscriptionRoleSEQ-ANSamplingSequence AnalysesSequence AnalysisSingle cell seqStimulator of Interferon GenesSystemTechnologyTissuesTranscriptTranscriptional ControlTranscriptional RegulationTranslationsVisualizationWorkaffinity purificationaged brainaging brainautomated analysisbiologiccDNAcGAMP STINGcGAMP-STINGcGAMP/STINGcGAS/STINGcell typechromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcomputational analysescomputational analysiscomputational methodologycomputational methodscomputational toolboxcomputational toolscomputational toolsetcomputer analysescomputer based methodcomputer methodscomputerized toolscomputing methodcyclic GMP-AMP synthase/STINGdegenerative diseases of motor and sensory neuronsdegenerative neurological diseasesdemethylationdesigndesigningfascinatefruit flygene locusgene productgenetic locusgenomic locationgenomic locusgenomic toolsimage-based methodimaging methodimaging modalityimprovedin vivoinsightinterestlife courseliving systemmodel of animalmouse modelmurine modelneural degenerationneurodegenerationneurodegenerativeneurodegenerative illnessneurological degenerationneuronal degenerationnovelpermissivenesspostmitoticprimary degenerative dementiapromoterpromotorreplicative agingresponsescRNA sequencingscRNA-seqsenile dementia of the Alzheimer typesingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell next generation sequencingsingle cell sequencingsingle cell transcriptomic profilingsingle moleculesingle-cell RNA sequencingsocial roletechnological innovationtechnology implementationtechnology validationtooltranscriptome sequencingtranscriptomic sequencingtranscriptomicstranslation
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Full Description

Core Summary
Core B will provide cutting edge tools to measure retrotransposition in

multicellular eukaryotes in the context of aging paradigms with a special focus on

Alzheimer’s disease and related disorders. In addition to providing appropriate

existing assays and mouse models to all of the participants, the core will also

develop improved retrotransposition reporters and genomics tools to enable the

detection and mapping of retrotransposition events in the various experimental

systems under study. The Core will also provide “Driver systems” that lead to

high level expression of these elements in both cell systems and animals. Finally,

the core will provide cutting edge sequencing and computational tools to analyze

both retrotransposition itself and the aberrant forms of LINE-1 expression and

reverse transcription observed in aging cells and organisms.

Grant Number: 5P01AG051449-10
NIH Institute/Center: NIH

Principal Investigator: Jef BOEKE

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