grant

Consequence of human satellite repeat expression and immunostimulatory potential in FSHD

Organization FRED HUTCHINSON CANCER CENTERLocation SEATTLE, UNITED STATESPosted 15 Sept 2025Deadline 31 Aug 2027
NIHUS FederalResearch GrantFY2025AddressAffectAreaAutomobile DrivingBasal Transcription FactorBasal transcription factor genesBiological MarkersBiologyBody TissuesCRISPR approachCRISPR based approachCRISPR methodCRISPR methodologyCRISPR techniqueCRISPR technologyCRISPR toolsCRISPR-CAS-9CRISPR-based methodCRISPR-based techniqueCRISPR-based technologyCRISPR-based toolCRISPR/CAS approachCRISPR/Cas methodCRISPR/Cas technologyCRISPR/Cas9CRISPR/Cas9 technologyCancersCas nuclease technologyCell BodyCell FunctionCell PhysiologyCell ProcessCellsCellular FunctionCellular PhysiologyCellular ProcessCentromereChromatinChromatin StructureClustered Regularly Interspaced Short Palindromic Repeats approachClustered Regularly Interspaced Short Palindromic Repeats methodClustered Regularly Interspaced Short Palindromic Repeats methodologyClustered Regularly Interspaced Short Palindromic Repeats techniqueClustered Regularly Interspaced Short Palindromic Repeats technologyComplexCoupledDNADNA Molecular BiologyDNA SequenceDNA methylation profilingDNA seqDNA sequencingDNAseqDeoxyribonucleic AcidDevelopmentDiagnosisDiseaseDisorderDouble-Stranded RNAERVsElementsEmbryoEmbryo DevelopmentEmbryogenesisEmbryonicEmbryonic DevelopmentEndogenous RetrovirusesEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessFSHDFacioscapulohumeral AtrophyFacioscapulohumeral Muscular DystrophyFacioscapulohumeral Type Progressive Muscular DystrophyFamilyFasioscapulohumeral Muscular DystrophyFunctional RNAFutureGene TranscriptionGeneral Transcription Factor GeneGeneral Transcription FactorsGenerationsGenetic TranscriptionGenomeGenome StabilityGenomic SegmentGenomic StabilityGoalsHERVsHealthHumanHuman DevelopmentHuman Endogenous RetrovirusesInnate Immune ResponseLandouzy Dejerine muscular dystrophyLandouzy-Dejerine DystrophyMalignant NeoplasmsMalignant TumorMediatingMessenger RNAMethodsMethyl-SeqMethylSeqMethylation sequencingModern ManMolecularMolecular BiologyMuscle CellsMuscular DystrophiesMyocytesMyodystrophicaMyodystrophyNatureNon-Polyadenylated RNANoncoding RNANontranslated RNANuclearNuclear ProteinPRC1PRC1 ProteinPathogenesisPathologicPathologyPatternPlayPolycomb Repressive Complex 1PrevalenceProteinsProteomicsRNARNA ExpressionRNA Gene ProductsRNA ProcessingRNA SplicingRNA methylationRegulatory ProteinRepetitive ElementRepetitive RegionsRepetitive SequenceReportingResearchRetrotransposonRibonucleic AcidRibonucleoproteinsRoleSatellite DNASkeletal MuscleSplicingSubcellular ProcessTandem Repeat SequencesTandem RepeatsTherapeuticTimeTissuesToxic effectToxicitiesTranscriptionTranscription ActivationTranscription Factor Proto-OncogeneTranscription factor genesTranscriptional ActivationUntranslated RNAVoluntary MuscleWorkbio-markersbiologic markerbiomarkercell typederepressiondesigndesigningdevelopmentaldrivingdsRNAepigenetic regulationepigeneticallygenetic regulatory proteingenome segmentgenomic regionhuman DNAhuman diseaseinsoluble aggregatemRNAmalignancymuscle dystrophyneoplasm/cancernoncodingprogramsprotein aggregateprotein aggregationregulatory gene productrepairrepairedscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial roletranscription factor
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Full Description

PROJECT SUMMARY
Facioscapulohumeral muscular dystrophy (FSHD) is the third most common form of muscular dystrophy that is

caused by mis-expression of an early embryonic transcription factor DUX4 in skeletal muscle. DUX4 induces

an early embryonic transcriptional program and activates transcription of LTR-retrotransposons, endogenous

retrovirus elements and repetitive sequences. A major mechanism driving DUX4-mediated cellular toxicity in

FSHD muscle is transcription of pericentric human satellite II (HSATII) repeats and subsequent formation of

HSATII-derived ribonucleoprotein (RNP) complexes. The long-term goal of this proposal is to provide a new

mechanistic understanding of DUX4-driven pathogenesis of FSHD and identify new disease biomarkers that

will aid in the diagnosis of FSHD and design of promising therapeutics. The significance of this proposal is that

it addresses a currently unexplored area in FSHD research – the impact of HSATII RNA expression in FSHD

pathogenesis and disease. The overall hypothesis is that transcriptional activation of HSATII and subsequent

RNA aggregation act as a molecular sink to sequester nuclear regulatory proteins exacerbating DUX4-

mediated cellular dysregulation. The specific aims of this proposal are: Determine the composition of HSATII-

derived ribonucleoprotein complexes and the consequence of their formation on cell function (Aim 1) and

elucidate the molecular mechanisms regulating HSATII regions (Aim 2). With the use of state-of-the-art

molecular biology approaches and generation of new targeting strategies this proposal will be the first to

dissect the mechanism(s) of FSHD disease pathology mediated by HSATII RNA aggregation and subsequent

RNP formation. Moreover, this work provides the basis for future studies of HSATII genome biology and

function in human development and disease.

Grant Number: 1K99AR081926-01A1
NIH Institute/Center: NIH

Principal Investigator: Tessa Arends

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