grant

COINSTAC 2.0: decentralized, scalable analysis of loosely coupled data

Organization GEORGIA STATE UNIVERSITYLocation ATLANTA, UNITED STATESPosted 1 Jul 2015Deadline 30 Jun 2026
NIHUS FederalResearch GrantFY2024AddressAdoptionAffectAggregated DataAgreementAlcohol Chemical ClassAlcoholsAlgorithmsAtlasesAwarenessBrainBrain Nervous SystemBrain imagingCannabisClassificationClinical DataClinical ResearchClinical StudyCocaineCommunitiesComputational toolkitConsentConsent DocumentsConsent FormsCoupledCrystal MethCrystal methamphetamineDataData AggregationData BanksData PoolingData SetDatabanksDecentralizationDeoxyephedrineDesoxyephedrineDevelopmentEncephalonEnvironmentFamilyFundingGeneticGenomicsHumanIRBIRBsIndividualInformaticsInformed Consent DocumentsInformed Consent FormsInstitutionInstitutional Review BoardsInternationalInvestigatorsKnowledgeLanguageLearningLegalLinkLocationMachine LearningMapsMeasuresMethamphetamineMethylamphetamineModelingModern ManMovementN-MethylamphetamineNational Institutes of HealthNeurosciencesNicotineOpiatesOpioidPerformancePhasePopulationPositionPositioning AttributePrivacyPrivatizationProcessPublic HealthQuality ControlReproducibilityResearchResearch PersonnelResearch ResourcesResearchersResourcesRiskRunningScienceSecuritySeriesSiteSourceSource CodeStatistical BiasStructureSubstance of AbuseSystemSystematicsTestingTimeTrainingUnited States National Institutes of HealthUpdateVisualizationWorkaddictionaddictive disorderbasebasesbody movementbrain visualizationcloud basedcommunity engagementcomputational platformcomputational resourcescomputational toolboxcomputational toolscomputational toolsetcomputerized data processingcomputerized toolscomputing platformcomputing resourcesdata depositorydata harmonizationdata processingdata re-usedata repositorydata reusedata set repositorydata sharingdata visualizationdataset repositorydeep learningdeep learning methoddeep learning strategydepositorydevelopmentaldistributed dataengagement with communitiesforgettingharmonized dataimprovedlarge data setslarge datasetslearning algorithmlife-long learninglifelong learningmachine based learningmethneural imagingneuro-imagingneuroimagingneurological imagingnew approachesnovelnovel approachesnovel strategiesnovel strategyopen dataopen scienceopen sourceopen-source datapeerpre-trained modelprivacy preservationrepositoryresearch studyscale upsubstance usesubstance usingsubstances of abusesuccesssupervised learningsupervised machine learningtoolunsupervised learningunsupervised machine learningusabilityvirtual
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Full Description

Project Summary/Abstract
The brain imaging community is greatly benefiting from extensive data sharing efforts currently underway.

However, there is still a major gap in that much data is still not openly shareable, which we propose to address.

In addition, current approaches to data sharing often include significant logistical hurdles both for the investigator

sharing the data (e.g. often times multiple data sharing agreements and approvals are required from US and

international institutions) as well as for the individual requesting the data (e.g. substantial computational re-

sources and time is needed to pool data from large studies with local study data). This needs to change, so that

the scientific community can create a venue where data can be collected, managed, widely shared and analyzed

while also opening up access to the (many) data sets which are not currently available (see overview on this

from our group7). The large amount of existing data requires an approach that can analyze data in a distributed

way while (if required) leaving control of the source data with the individual investigator or the data host; this

motivates a dynamic, decentralized way of approaching large scale analyses. During the previous funding

period, we developed a peer-to-peer system called the Collaborative Informatics and Neuroimaging Suite Toolkit

for Anonymous Computation (COINSTAC). Our system provides an independent, open, no-strings-attached tool

that performs analysis on datasets distributed across different locations. Thus, the step of actually aggregating

data is avoided, while the strength of large-scale analyses can be retained. During this new phase we respond

to the need for advanced algorithms such as linear mixed effects models and deep learning, by proposing to

develop decentralized models for these approaches and also implement a fully scalable cloud-based framework

with enhanced security features. To achieve this, in Aim 1, we will incorporate the necessary functionality to

scale up analyses via the ability to work with either local or commercial private cloud environments, together with

advanced visualization, quality control, and privacy and security features. This suite of new functions will open

the floodgates for the use of COINSTAC by the larger neuroscience community to enable new discovery and

analysis of unprecedented amounts of brain imaging data located throughout the world. We will also improve

usability, training materials, engage the community in contributing to the open source code base, and ultimately

facilitate the use of COINSTAC's tools for additional science and discovery in a broad range of applications. In

Aim 2 we will extend the framework to handle powerful algorithms such as linear mixed effects models and deep

learning, and to perform meta-learning for leveraging and updating fit models. And finally, in Aim 3, we will test

this new functionality through a partnership with the worldwide ENIGMA addiction group, which is currently not

able to perform advanced machine learning analyses on data that cannot be centrally located. We will evaluate

the impact of 6 main classes of substances of abuse (e.g. methamphetamines, cocaine, cannabis, nicotine,

opiates, alcohol and their combinations) using the new developed functionality.

3

Grant Number: 5R01DA040487-10
NIH Institute/Center: NIH

Principal Investigator: VINCE CALHOUN

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