grant

Cellular Plasticity and equilibrium in GBM Progression

Organization NORTHWESTERN UNIVERSITYLocation CHICAGO, UNITED STATESPosted 1 Apr 2017Deadline 31 May 2027
NIHUS FederalResearch GrantFY2025AddressAnabolismAttentionBloodBlood Reticuloendothelial SystemBrainBrain Nervous SystemCRISPRCRISPR/Cas systemCancer PatientCell BodyCell Growth in NumberCell MultiplicationCell ProliferationCellsCellular ExpansionCellular GrowthCellular ProliferationChIP SequencingChIP-seqChIPseqChemoresistanceClinicalClinical TrialsClustered Regularly Interspaced Short Palindromic RepeatsCollaborationsCombined Modality TherapyComplexDNADNA DamageDNA Damage RepairDNA InjuryDNA MaintenanceDNA RepairDNA ReplicationDNA StabilityDNA SynthesisDNA biosynthesisDataDeoxyribonucleic AcidDisease ProgressionEncephalonEngraftmentEnzyme GeneEnzymesEpigeneticEpigenetic ChangeEpigenetic MechanismEpigenetic ProcessEquilibriumFamilyFundingGenomeGlioblastomaGoalsGrade IV Astrocytic NeoplasmGrade IV Astrocytic TumorGrade IV AstrocytomaGuanineHeterogeneityHumanIn VitroIndividualInter-tumoral heterogeneityIsoformsIsotope LabelingIsotopesKnock-outKnockoutKnowledgeLarge Subunit Ribonucleotide ReductaseLearningLegal patentM1 Subunit Ribonucleotide ReductaseMeasuresMediatingMetabolicMiceMice MammalsModern ManModificationMolecularMultimodal TherapyMultimodal TreatmentMurineMusNucleotidesPDX modelPatentsPathway interactionsPatient derived xenograftPatientsPermeabilityPre-Clinical ModelPreclinical ModelsPrimary Brain NeoplasmsPrimary Brain TumorsPrimary NeoplasmPrimary TumorProcessProductionProtein IsoformsPurinesR1 GeneR1 Subunit Gene Ribonucleotide ReductaseR1 proteinRRM1RRM1 geneRadiation therapyRadiotherapeuticsRadiotherapyRecurrenceRecurrentRecurrent NeoplasmRecurrent tumorRegulationResearchResistanceRibonucleotide ReductaseRibonucleotide Reductase R1 SubunitRibonucleotide Reductase SubunitSafetySamplingStem Cell likeStressTemodalTemodarTestingTherapeuticTimeToxic effectToxicitiesTreatment EfficacyTriapineTumor CellUnscheduled DNA Synthesisbalancebalance functionbiosynthesiscancer progenitorcancer progenitor cellscancer stem cellcancer stem like cellcell growthchemoresistantchemotherapychemotherapy resistancechemotherapy resistantchromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingcombination therapycombined modality treatmentcombined treatmentdGTPdeoxy-GTPdeoxyguanosine triphosphateepigenetic regulationepigeneticallyexperimentexperimental researchexperimental studyexperimentsglioblastoma multiformeimproved outcomein vivoinhibitorinsightintertumoral heterogeneityintervention efficacymalignant progenitormalignant stem cellmethazolastonemulti-modal therapymulti-modal treatmentnanodrugnanopharmaceuticalneoplasm recurrenceneoplastic cellnew approachesnovelnovel approachesnovel strategiesnovel strategyoncogenic progenitoroncogenic stem cellspathwaypatient derived xenograft modelpreventpreventingprogenitor capacityprogenitor cell likeprogenitor cell poolprogenitor cell populationprogenitor like cancer cellprogenitor poolprogenitor populationprogenitor-likeradiation treatmentresistance mechanismresistance to therapyresistantresistant mechanismresistant to therapyresponseresponse to therapyresponse to treatmentscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell analysissingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingspongioblastoma multiformestem and progenitor cell populationstem cell characteristicsstem cell poolstem cell populationstem like cancer cellstem-likestemnesstemozolomidetherapeutic efficacytherapeutic resistancetherapeutic responsetherapy efficacytherapy resistanttherapy responsetreatment resistancetreatment responsetreatment responsivenesstreatment with radiationtriphosphatetripolyphosphatetumor
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Full Description

PROJECT SUMMARY
To advance our understanding of therapeutic resistance in Glioblastoma (GBM), it is essential to characterize

the individual cell during therapy those fuel tumor recurrence in GBM. However, it is challenging to study the

GBM during conventional radio- and chemotherapy due to limited accessibility to patient samples during this

time period. Our lab performed a single-cell RNA sequencing screen in the patient-derived xenograft model of

GBM during temozolomide (TMZ) therapy. Our analysis revealed that the Ribonucleotide Reductase Regulatory

Subunit 2 (RRM2) mediates deoxynucleoside triphosphates (dNTPs) production necessary for proper DNA

replication stable cell growth, promotes metabolic adaptation to TMZ therapy, and initiate recurrence. We have

identified a novel mechanism where RRM2-mediated dCTP and dGTP can enhance the DNA repair in response

to TMZ and promotes resistance to therapy. Based on this, we hypothesize that RRM2-mediated RNR activity

is critical for chemoresistance in GBM. To investigate this hypothesis, we intend to elucidate the RNR-mediated

chemoresistance in GBM (Aim 1). Next, we will evaluate a blood-brain permeable RRM2 inhibitor to prevent

RNR-mediated chemoresistance in GBM (Aim 2). We established collaboration with Nanopharmaceutic, which

holds the patent for producing clinical-grade 3-AP and will provide us with clinical-grade 3-AP to test its efficacy

further and advance our understanding of the mechanism of action by which it can be used to treat GBM patients.

Finally, we intend to investigate the mechanism of therapeutic resistance by specific nucleotides produced by

the RRM2-mediated de novo pathway (Aim 3). Collectively, our studies will provide novel insights regarding

changes in dNTP synthesis that are associated with GBM adaptation and resistance during chemotherapy. This

information, in turn, is expected to reveal novel approaches for delaying, if not preventing, tumor recurrence.

Grant Number: 5R01NS096376-09
NIH Institute/Center: NIH

Principal Investigator: Atique Ahmed

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