grant

Brain Myeloid Cells are Sources of HIV-associated Damage and Viral Dispersal

Organization UNIVERSITY OF CALIFORNIA, SAN DIEGOLocation LA JOLLA, UNITED STATESPosted 15 Jul 2021Deadline 30 Apr 2027
NIHUS FederalResearch GrantFY2025(TNF)-αAIDS VirusAccountingAcquired Immune Deficiency Syndrome VirusAcquired Immunodeficiency Syndrome VirusAcquired brain injuryAddressAfter CareAfter-TreatmentAftercareAltruismAmmon HornAnti-Retroviral AgentsAssayAutopsyBasal GangliaBasal NucleiBeta Proprotein Interleukin 1BindingBioassayBiological AssayBloodBlood - brain barrier anatomyBlood Reticuloendothelial SystemBlood-Brain BarrierBody TissuesBrainBrain InjuriesBrain Nervous SystemCD11cCD68 antigenCD86CD86 geneCNS Nervous SystemCachectinCd68Cell BodyCell DeathCell Death SignalingCell Death Signaling ProcessCell DensityCell FunctionCell IsolationCell LocomotionCell MigrationCell MovementCell PhysiologyCell ProcessCell SegregationCell SeparationCell Separation TechnologyCellsCellular FunctionCellular MigrationCellular MotilityCellular PhysiologyCellular ProcessCellular injuryCentral Nervous SystemCerebellumCerebrospinal FluidCessation of lifeCharacteristicsClonal ExpansionConsequences of HIVCornu AmmonisDNADataDeathDeoxyribonucleic AcidDevelopmentDrug TherapyDrugsEncephalonEnrollmentEventGene ExpressionGene TranscriptionGenesGenetic TranscriptionGiftsGoalsHIVHIV InfectionsHIV-1HIV-IHIV1HTLV-III InfectionsHTLV-III-LAV InfectionsHemato-Encephalic BarrierHeterogeneityHippocampusHortega cellHumanHuman Immunodeficiency Virus Type 1Human Immunodeficiency VirusesHuman T-Lymphotropic Virus Type III InfectionsHuman immunodeficiency virus 1IFN-Gamma-Inducing Factor GeneIFN-gamma-Inducing FactorIGIFIGIF GeneIL-1 GammaIL-1 Gamma GeneIL-1 betaIL-1 βIL-1-bIL-18IL-18 GeneIL-1gIL-1g GeneIL-1βIL1-BetaIL1-βIL18IL18 ProteinIL18 geneIL1B ProteinIL1F2IL1F4IL1F4 GeneIL1βITGAXITGAX geneImmune responseInflammasomeInflammationInflammatoryInterferon-Gamma-Inducing Factor GeneInterferon-gamma-Inducing FactorInterleukin 18 (Interferon-Gamma-Inducing Factor)Interleukin 18 (Interferon-Gamma-Inducing Factor) GeneInterleukin 18 ProproteinInterleukin 18 Proprotein GeneInterleukin 1betaInterleukin-1 GammaInterleukin-1 Gamma GeneInterleukin-1 betaInterleukin-18Interleukin-18 PrecursorInterleukin-18 Precursor GeneInterleukin-1βInterruptionKnowledgeLAV-HTLV-IIILengthLinear ModelsLiteratureLymphadenopathy-Associated VirusMGC12320MGC12320 GeneMacrophageMacrophage-Derived TNFMaintenanceMapsMeasuresMedicationMedulla SpinalisMicrogliaModelingModern ManModernizationMolecular InteractionMonocyte-Derived TNFMyeloid Cell ActivationMyeloid CellsNerve CellsNerve UnitNervous System InjuriesNervous System TraumaNervous System damageNeural CellNeuraxisNeurocognitiveNeurocyteNeurological DamageNeurological InjuryNeurological traumaNeuronsNon-Polyadenylated RNAOpiatesOpioidOrganParentsParticipantPathway interactionsPattern RecognitionPattern recognition receptorPenetrationPeripheralPersonsPharmaceutical PreparationsPharmacological TreatmentPharmacotherapyPhenotypePopulationPredispositionPreinterleukin 1 BetaProcessProvirusesRIP1RIPK1RIPK1 geneRNARNA ExpressionRNA Gene ProductsReceptor-Interacting Serine/Threonine Kinase 1ResidualResidual stateRestRibonucleic AcidRoleSiteSortingSourceSpinal CordSpleenSpleen Reticuloendothelial SystemSubcellular ProcessSusceptibilityT-CellsT-LymphocyteTNFTNF ATNF AlphaTNF geneTNF-αTNFATNFαThalamic structureThalamusTimeTissuesTranscriptionTransmissionTumor Necrosis FactorTumor Necrosis Factor-alphaViralVirusVirus-HIValtruisticanti-retroviralantiretroviral therapyantiretroviral treatmentbloodbrain barrierbrain cellbrain damagebrain healthbrain-injuredcell damagecell injurycell motilitycell sortingcellular damagecerebral spinal fluidcohortcytokinedamage to cellsdensitydevelopmentaldrug interventiondrug treatmentdrug/agentenrollfrontal cortexfrontal lobegenome sequencinggitter cellgray matterhippocampalhost responseileumimmune system responseimmunoresponseimprovedinjury to cellsinsightintegration sitelicit opioidmesogliamicroglial cellmicrogliocytemigrationnecrocytosisnecropsyneural inflammationneuroinflammationneuroinflammatoryneuronalneurotraumaopiate consumptionopiate drug useopiate exposureopiate intakeopiate medicationopiate useopioid consumptionopioid drug useopioid exposureopioid intakeopioid medicationopioid useparentparticipant enrollmentpathwaypatient enrollmentperivascular glial cellpharmaceutical interventionpharmacological interventionpharmacological therapypharmacology interventionpharmacology treatmentpharmacotherapeuticspost treatmentpostmortemprescribed opiateprescribed opioidprescription opiateprescription opioidprotein expressionscRNA sequencingscRNA-seqsingle cell RNA-seqsingle cell RNAseqsingle cell expression profilingsingle cell transcriptomic profilingsingle-cell RNA sequencingsocial rolespinal fluidsubstantia albasubstantia griseathalamicthymus derived lymphocytetraffickingtraittranscriptomicstransmission processwhite matter
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Full Description

SUMMARY
HIV infects the brain soon after transmission, but it is unknown how infected brain cells contribute to HIV

persistence and whether these cells release viable virus that can seed cells outside the brain. It is also unclear

how HIV persistence leads to local cellular damage, although inflammatory and external factors (like antiretroviral

[ARV] penetration and opioids) likely impact such damage. Such new knowledge could be important for HIV cure

strategies and ways to improve brain health in persons with HIV (PWH).

This project will address stated objectives of RFA-MH-20-701, Role of Myeloid Cells in Persistence and

Eradication of HIV-1 Reservoirs from the Brain, by: (i) mapping HIV reservoir size, composition, and activity in

brain myeloid cells (BMC) in relation to cellular density and levels of ARV and opioids, (ii) determining the role

of BMC in HIV dispersal within the central nervous system (CNS) and across the body in the setting of ARV

treatment (ART) and after treatment interruption, and (iii) defining how HIV reservoir size and activity in BMC is

associated with local inflammation and cell damage.

Our goal is to examine the role of BMC in HIV persistence, local inflammatory-induced damage and as a source

of viruses that can egress from the CNS to re-seed peripheral organs.

The rationale for this project is supported by literature demonstrating that brain macrophages and microglia can

harbor HIV that persists during modern ART. The low turnover of these macrophages and microglial cells (from

months to years) make them unique reservoirs for HIV. While HIV in resting T cells has been extensively

characterized, the role of BMC as a source of rebound upon cessation of ART is yet to be determined. Further,

HIV in BMC likely triggers immune responses, even during ART, causing local damage.

Our overall hypothesis is that BMC (primarily microglial cells) contribute to HIV persistence in the CNS with

regional heterogeneity. HIV harbored in these BMC likely also causes inflammation-associated brain damage

and contributes to viral dispersal when ART is stopped. We also hypothesize that HIV persistence, local damage

and viral dispersal are influenced by local ARV and opioid levels.

To address these open questions, our study will collect and analyze tissues throughout the CNS (white and grey

matters of frontal cortex, thalamus, hippocampus, basal ganglia, cerebellum, spinal cord), ileum, spleen, blood

and cerebrospinal fluid (CSF) of altruistic PWH enrolled in the Last Gift cohort, an ongoing rapid autopsy study.

Some participants (n=15) will remain virally suppressed until the time of death, while others (n=5) will want to

stop their ART before death. Half of the population will use prescription opioids.

These studies will be important for PWH because they will provide new insights for the development of strategies

to clear HIV infection and lessen inflammatory-dependent microglial-induced neurological damage.

Grant Number: 5R01DA055491-05
NIH Institute/Center: NIH

Principal Investigator: Antoine Chaillon

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