grant

Assessing the mechanisms directing cell fate in the dorsal spinal cord

Organization UNIVERSITY OF CALIFORNIA LOS ANGELESLocation LOS ANGELES, UNITED STATESPosted 1 May 2022Deadline 30 Apr 2027
NIHUS FederalResearch GrantFY2025ATRAAddressAdoptedAfter CareAfter-TreatmentAftercareBMP type I receptorBMP4BMPR-IBasal Transcription FactorBasal transcription factor genesBone Morphogenetic Protein GeneBone Morphogenetic ProteinsCell BodyCell Communication and SignalingCell SignalingCell modelCellsCellular modelChIP SequencingChIP-seqChIPseqChicken ModelChicken animal modelChickensComplexConnector NeuronDataDevelopmentDevelopmental BiologyDiseaseDisorderDorsalDrug ModulationDrug ScreeningES Cell LineES cell differentiationESC differentiationEmbryonic Stem Cell LineEmotional well beingEnvironmentFamilyFamily memberFeels wellGallus domesticusGallus gallusGallus gallus domesticusGametesGene Expression MonitoringGene Expression Pattern AnalysisGene Expression ProfilingGene TranscriptionGeneral Transcription Factor GeneGeneral Transcription FactorsGenetic TranscriptionGerm CellsGerm-Line CellsGrowth AgentsGrowth FactorGrowth SubstancesIn VitroIndividualInjuryIntercalary NeuronIntercalated NeuronsInterneuronsInternuncial CellInternuncial NeuronIntracellular Communication and SignalingIntracellular Second MessengerItchingLigandsLightLogicMediatingMedicalMedulla SpinalisMiceMice MammalsModalityModelingMouse ES CellMouse ESCMouse Embryonic ProgenitorMouse Embryonic Stem CellsMurineMusNatureNeural Stem CellNociceptionNormal mental conditionNormal mental stateNormal psycheOutcomePainPainfulPalsyParalysedPathway interactionsPatientsPatternPeripheralPhotoradiationPlegiaPluripotent Stem CellsPopulationProcessProductionProliferatingProprioceptionProtein FamilyProteins Growth FactorsProtocolProtocols documentationPruritic DisorderPruritisPruritusPsychological Well BeingRNA ExpressionReactionReceptor ProteinReproductive CellsResearchResolutionRetinoic AcidRoleSHHSHH geneSecond Messenger SystemsSecond MessengersSense of well-beingSensorySeriesSex CellSignal PathwaySignal TransductionSignal Transduction SystemsSignalingSignaling Factor Proto-OncogeneSignaling Pathway GeneSignaling ProteinSonic HedgehogSpecific qualifier valueSpecifiedSpinalSpinal CordSpinal cord damageSubgroupSystemTouchTouch sensationTrans Vitamin A AcidTranscript Expression AnalysesTranscript Expression AnalysisTranscriptionTranscription Factor Proto-OncogeneTranscription factor genesTranslatingTretinoinTretinoinumVitamin A AcidWNT Signaling PathwayWNT signalingWell in selfall-trans-Retinoic Acidall-trans-Vitamin A acidanalyze gene expressionbiological signal transductionbone morphogenetic protein receptor type Ibone morphogenic proteincell typechromatin immunoprecipitation coupled with sequencingchromatin immunoprecipitation followed by sequencingchromatin immunoprecipitation with sequencingchromatin immunoprecipitation-seqchromatin immunoprecipitation-sequencingdesigndesigningdevelopmentaldifferentiation factorsdifferentiation in embryonic stem cellsdifferentiation protocoldrug detectiondrug testingembryonic precursor differentiationembryonic stem cell differentiationemotional wellbeingemotional wellnessgene expression analysisgene expression assayglobal gene expressionglobal transcription profilein vivoinitial cellinjuriesitch sensationknock-downknockdownmESCmembermental well-beingmental wellbeingmental wellnessmorphogenic factorsmorphogensmotor controlmouse modelmurine ES cellsmurine ESCmurine embryonic progenitormurine embryonic stem cellmurine modelnerve stem cellneuralneural precursorneural precursor cellneural progenitorneural progenitor cellsneural stem and progenitor cellsneurogenic progenitorsneurogenic stem cellneuron progenitorsneuronal progenitorneuronal progenitor cellsneuronal stem cellsneuroprogenitornociceptiveparalysisparalyticpathwaypluripotent progenitorpost treatmentprogenitorprogenitor and neural stem cellsprogenitor cell fateprogenitor cell modelprogenitor fateprogenitor modelpsychological wellbeingpsychological wellnessreceptorrepairrepairedresolutionsresponseself wellnesssense of wellbeingsexual cellsignal transduction second messengerssmall molecular inhibitorsmall molecule inhibitorsocial rolesomatosensorystem and progenitor cell fatestem and progenitor cell modelstem cell based modelstem cell derived modelstem cell fatestem cell modeltactile sensationtrans-Retinoic Acidtranscription factortranscriptional profilingtranscriptometranscriptomics
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Full Description

Project Summary
The somatosensory system permits us to perceive and react to the environment through modalities that

include touch, nociception, thermosensation and proprioception. Somatosensory information is received

peripherally and then relayed centrally by different populations of dorsal interneurons (dIs; dI1-dI6) in the spinal

cord. Our research objectives are to understand the mechanisms that establish dIs during development and

then apply these principles towards designing differentiation protocols to direct the formation of specific

populations of dIs from pluripotent stem cells. These cells have the potential to repair damaged sensory

circuits and act as substrates for drug screening platforms. We have focused on dissecting the role of the bone

morphogenetic protein (BMP) family in dI fate specification. BMPs were widely assumed to act as morphogens,

patterning the dorsal spinal cord in a concentration-dependent mechanism similar to the manner in which sonic

hedgehog (Shh) patterns the ventral spinal cord. However, our recent studies using mouse, chicken, and

mouse embryonic stem cell (mESC) models have found that no evidence that BMPs act as morphogens.

Rather, BMPs have signal-specific activities, with differential abilities to direct dorsal progenitor (dP) patterning

and/or differentiation through specific type I BMP receptors. Our recent in vivo and in vitro studies have also

suggested that dI fates are established in a series of nested choice points. In our model, spinal progenitors are

dorsalized by retinoic acid (RA), subdivided into multipotential dP subgroups by BMP signaling, and then

resolve into specific dI fates. Since little is known about this patterning process, we will assess in Aim 1 how

multipotential dP fates are first established by RA and BMP signaling and identify the mechanisms directing

multipotential dPs into specific dI identities. In Aim 2, we will determine the nature of the intracellular response

that permits specific BMPs to drive dPs towards different dI identities, addressing two unresolved questions: [1]

are canonical receptor regulated (R)-Smads activated in a BMP-specific manner to result in distinct patterning

activities? And [2] what factors do the R-Smads in turn regulate to promote dI fates? Together, these studies

will investigate a long-standing problem in developmental biology, i.e., understanding how specific outcomes

arise from a common signal, and shed light on the specification of dIs, cell types needed to permit paralyzed

patients to again interpret their sensory environment. Our specific aims are as follows:

Aim 1: Identify the mechanism(s) that establish multipotential dPs and assign them into individual dI fates.

Hypothesis: RA±BMP4 direct the formation of multipotential dP subgroups, which resolve into specific dI fates

by the asymmetric activation of additional endogenous signaling pathways, such as the Wnt pathway.

Aim 2: Assess the role of the Smad and Id families in BMP-induced dI fate specification.

Hypothesis: BMPs differentially activate Smad1 and/or Smad5, to regulate the activity of Id family members.

Grant Number: 5R01NS123187-04
NIH Institute/Center: NIH

Principal Investigator: SAMANTHA BUTLER

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