grant

Mapping immuno-genomic drivers of the head and neck precancer invasive-disease transition

Organization UNIVERSITY OF CALIFORNIA, SAN DIEGOLocation LA JOLLA, UNITED STATESPosted 15 Sept 2023Deadline 31 Aug 2028
NIHUS FederalResearch GrantFY2025AddressAlcohol DrinkingAlcohol consumptionAtlasesAutomobile DrivingB7-H1BioinformaticsBody TissuesCD274CD3CD3 AntigensCD3 ComplexCD3 moleculeCD68 antigenCD8CD8BCD8B1CD8B1 geneCancersCd68Cell BodyCellsChromosomal GainChromosomal InstabilityChromosome InstabilityClinicalDNA AlterationDNA Sequence AlterationDNA mutationDataDevelopmentDiagnosisDiseaseDisorderEpidemiologyEpitheliumEtOH drinkingEtOH useEvaluationEventFormalinGene ExpressionGeneral PopulationGeneral PublicGeneticGenetic AlterationGenetic ChangeGenetic defectGenetic mutationGenomeGenomicsHNSCCHPVHPV [-]HPV negativeHPV(-)HPV(-) HNSCCHPV(-) head and neck squamous cell carcinomaHPV- HNSCCHPV-negative HNSCCHPV-negative head and neck cancerHPV-negative head and neck squamous cell carcinomaHead and NeckHead and Neck CancerHead and Neck CarcinomaHead and Neck Squamous Cell CarcinomaHead and neck structureHistologicHistologicallyHuman Papilloma VirusHuman PapillomavirusImmuneImmune SurveillanceImmunesImmunofluorescenceImmunofluorescence ImmunologicImmunogeneticsImmunogenomicsImmunologic SurveillanceImmunomodulationImmunosurveillanceInfectionInfectious Human Wart VirusInterceptKeratotic PlaqueKnowledgeLYT3LesionLeukoplakiaMalignantMalignant - descriptorMalignant ConversionMalignant Head and Neck NeoplasmMalignant NeoplasmsMalignant Oral Cavity NeoplasmMalignant Oral Cavity TumorMalignant Oral NeoplasmMalignant TumorMapsMediationModelingMolecularMorphologyMouth CancerMouth LeukoplakiaMutationNatural HistoryNegotiatingNegotiationOKT3 antigenOralOral CancerOral Cavity LeukoplakiaOral Cavity Squamous Cell CarcinomaOral KeratosisOral LeukoplakiaOral squamous cell carcinomaPD-L1PDL-1Paraffin EmbeddingPatientsPersonsPopulationPreventionProcessProgrammed Cell Death 1 Ligand 1Programmed Death Ligand 1Prospective cohortRNA SeqRNA sequencingRNAseqRecordsResolutionRiskRisk FactorsRoleSCCHNSamplingScreening for Oral CancerSequence AlterationStructureSubgroupSurvey InstrumentSurveysT3 AntigensT3 ComplexT3 moleculeTissuesTobacco ConsumptionTobacco useTumor ImmunityWhole Bloodabsence of HPVabsence of human papillomavirusalcohol ingestionalcohol intakealcohol product usealcohol usealcoholic beverage consumptionalcoholic drink intakeanti-canceranti-tumor immunityantitumor immunitybio-informatics pipelinebiobankbioinformatics pipelinebiorepositorycancer immunitycancer initiationcohortdevelopmentaldriver lesiondriver mutationdrivingepidemiologicepidemiologicalethanol consumptionethanol drinkingethanol ingestionethanol intakeethanol product useethanol useexomeexome sequencingexome-seqgenome mutationgenomic alterationgenomic datagenomic datasetglobal gene expressionglobal transcription profilehead and neck squamous carcinomahead and neck squamous cell cancerhead/neck cancerhuman papillomavirus (-) head and neck squamous cell carcinomahuman papillomavirus - head and neck squamous cell carcinomahuman papillomavirus negativehuman papillomavirus negative head and neck cancerhuman papillomavirus negative head and neck squamous cell carcinomahuman papillomavirus- head and neck squamous cell carcinomaimmune modulationimmune regulationimmunogenicimmunologic reactivity controlimmunomodulatoryimmunoregulationimmunoregulatorymalignancymalignant head and neck tumormalignant mouth neoplasmmalignant mouth tumormolecular biomarkermolecular markermouse modelmouth SCCmouth squamous cell carcinomamurine modelneoplasm/cancerneoplasticnon-HPV HNSCCnon-human papillomavirus head and neck squamous cell carcinomanoveloral cancer early detectionoral carcinogenesisoral cavity SCCoral cavity canceroral mucosa leukokeratosisoral mucosa leukoplakiaoral precanceroral premalignancyoral squamous canceroral squamous carcinomaoral tissueprecancerprecancerouspredictive biological markerpredictive biomarkerspredictive markerpredictive molecular biomarkerpremalignantprognosticationprogrammed cell death ligand 1programmed cell death protein ligand 1protein death-ligand 1resolutionssocial roletobacco product usetranscriptometranscriptome sequencingtranscriptomic sequencingtranscriptomicswart virus
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PROJECT SUMMARY
Globally, more than 900,000 people are diagnosed with head and neck squamous cell carcinoma (HNSCC) each
year, with more that 250,000 dying annually from this cancer. Infection with human papilloma virus (HPV), a
known risk factor for developing HNSCC, significantly impacts clinical prognostication. Specifically, for HPV-
negative…

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Mapping immuno-genomic drivers of the head and neck precancer invasive-disease transition — UNIVERSITY OF CALIFORNIA, SA | Dev Procure