grant
Fast and slow prediction of stable and transient protein-protein interactions
Organization COLUMBIA UNIVERSITY HEALTH SCIENCESLocation NEW YORK, UNITED STATESPosted 1 Sept 2025Deadline 31 Aug 2029
NIHUS FederalResearch GrantFY2025AI systemAffinityArtificial IntelligenceAssayAutomobile DrivingAwardBase SequenceBindingBinding SitesBioassayBiological AssayBiologyBiophysicsBudding YeastCASP-14Cell Communication and SignalingCell ComponentsCell FunctionCell PhysiologyCell ProcessCell SignalingCell StructureCellular FunctionCellular PhysiologyCellular ProcessCellular StructuresChemicalsClassificationCombining SiteCommunicable DiseasesCommunitiesComplementComplement ProteinsComplexComputational toolkitComputer ReasoningCustomDNA mutationDataData SetDetectionDevelopmentDiseaseDisorderDrug ModulationDrug TargetingEndomycetalesEvolutionFamilyFission YeastFutureGenetic ChangeGenetic defectGenetic mutationHourHumanIndividualInfectious DiseasesInfectious DisorderIntracellular Communication and SignalingLaboratoriesLanguageLearningLigandsLiteratureLogicMICE enzymeMachine IntelligenceMachine LearningMaintenanceMapsMass Photometry/Spectrum AnalysisMass SpectrometryMass SpectroscopyMass SpectrumMass Spectrum AnalysesMass Spectrum AnalysisMediatingMethodsModelingModern ManMolecular InteractionMolecular MachinesMutateMutationNucleotide SequenceOrganismPatternPeptide DomainPeptidesPhage DisplayPlayPost-Translational Modification Protein/Amino Acid BiochemistryPost-Translational ModificationsPost-Translational Protein ModificationPost-Translational Protein ProcessingPosttranslational ModificationsPosttranslational Protein ProcessingProbabilityProcessPropertyProtein DomainsProtein Interaction MapProtein ModificationProtein-Protein Interaction MapProteinsProteomeReactionReactive SiteResearchRiceRoleS pombeS. pombeSH2 DomainsSaccharomycetalesSchizosaccharomyces pombeSignal TransductionSignal Transduction SystemsSignalingSourceStatistical MethodsStructureSubcellular ProcessSurfaceSystematicsTechniquesTertiary Protein StructureTestingTrainingValidationWorkbiological signal transductionbiophysical foundationbiophysical principlesbiophysical sciencesblindcaspase 14complementationcomputational toolboxcomputational toolscomputational toolsetcomputer based predictioncomputerized toolscostcrosslinkcustomsdata modalitiesdata to traindataset to traindeep learningdeep learning methoddeep learning strategydesigndesigningdevelopmentaldisease causing variantdisease modeldisease-causing alleledisease-causing mutationdisorder modeldrivingexperimentexperimental researchexperimental studyexperimentsgenome mutationhuman interactomehuman pathogenin silicolab assignmentlab experimentlaboratory activitylaboratory assignmentlaboratory exerciselaboratory experimentliving systemmachine based learningmachine learning based modelmachine learning modelmath learningmathematical learningmathematics learningmembermethod developmentmini-ICEmultidisciplinarymutantnovelnucleic acid sequencepathogenpathogenic allelepathogenic variantpeptide aminoacid sequencepeptide sequencepredictive modelingprotein aminoacid sequenceprotein complexprotein foldingprotein protein interactionprotein structureprotein structure predictionprotein structuresproteins structuresocial rolesrc Homology Region 2 Domainstatistic methodssupervised learningsupervised machine learningtooltraining dataunsupervised learningunsupervised machine learningvalidations
Description preview
Protein-protein interactions (PPIs) underpin processes ranging from transduction of signaling networks to
maintenance of cellular structure. Identifying new human PPIs may uncover interactions targetable by PPI-
modulating drugs, while identifying human-pathogen PPIs could shed light on processes driving infectious
diseases. Many studies have…
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